Hb_000377_140

Information

Type -
Description -
Location Contig377: 225333-228000
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_140 0.0 - - -
2 Hb_009102_020 0.1716044093 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
3 Hb_144547_010 0.1785039552 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_123560_030 0.1973854044 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_023051_010 0.199467457 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
6 Hb_000982_150 0.2568531113 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
7 Hb_004052_160 0.2740375557 - - Chain A, Rna Binding Protein
8 Hb_009372_050 0.2801996954 - - unnamed protein product [Vitis vinifera]
9 Hb_000438_150 0.2848109715 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
10 Hb_002235_270 0.2920613732 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
11 Hb_000242_020 0.2949745522 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
12 Hb_025595_010 0.3014111505 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
13 Hb_000663_030 0.3015455121 - - -
14 Hb_001449_060 0.3022596646 - - kelch repeat protein, putative [Ricinus communis]
15 Hb_048103_010 0.3029097458 - - -
16 Hb_005542_100 0.3103099148 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
17 Hb_000258_360 0.3116395356 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
18 Hb_047560_010 0.3175768749 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
19 Hb_002196_010 0.3294344226 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
20 Hb_000997_010 0.3315306258 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000377_140 Hb_000377_140 Hb_009102_020 Hb_009102_020 Hb_000377_140--Hb_009102_020 Hb_144547_010 Hb_144547_010 Hb_000377_140--Hb_144547_010 Hb_123560_030 Hb_123560_030 Hb_000377_140--Hb_123560_030 Hb_023051_010 Hb_023051_010 Hb_000377_140--Hb_023051_010 Hb_000982_150 Hb_000982_150 Hb_000377_140--Hb_000982_150 Hb_004052_160 Hb_004052_160 Hb_000377_140--Hb_004052_160 Hb_002235_270 Hb_002235_270 Hb_009102_020--Hb_002235_270 Hb_000438_150 Hb_000438_150 Hb_009102_020--Hb_000438_150 Hb_009102_020--Hb_144547_010 Hb_003906_030 Hb_003906_030 Hb_009102_020--Hb_003906_030 Hb_035761_010 Hb_035761_010 Hb_009102_020--Hb_035761_010 Hb_047560_010 Hb_047560_010 Hb_144547_010--Hb_047560_010 Hb_144547_010--Hb_000438_150 Hb_143933_010 Hb_143933_010 Hb_144547_010--Hb_143933_010 Hb_000197_170 Hb_000197_170 Hb_144547_010--Hb_000197_170 Hb_123560_030--Hb_144547_010 Hb_123560_030--Hb_009102_020 Hb_005542_100 Hb_005542_100 Hb_123560_030--Hb_005542_100 Hb_001449_060 Hb_001449_060 Hb_123560_030--Hb_001449_060 Hb_001001_050 Hb_001001_050 Hb_123560_030--Hb_001001_050 Hb_000792_080 Hb_000792_080 Hb_023051_010--Hb_000792_080 Hb_048103_010 Hb_048103_010 Hb_023051_010--Hb_048103_010 Hb_023051_010--Hb_004052_160 Hb_023051_010--Hb_000982_150 Hb_011781_040 Hb_011781_040 Hb_023051_010--Hb_011781_040 Hb_020549_010 Hb_020549_010 Hb_000982_150--Hb_020549_010 Hb_000982_150--Hb_004052_160 Hb_013877_020 Hb_013877_020 Hb_000982_150--Hb_013877_020 Hb_068347_010 Hb_068347_010 Hb_000982_150--Hb_068347_010 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32232 0.608203 0.464773 1.18654 0 0.482995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis