Hb_000380_010

Information

Type -
Description -
Location Contig380: 598-11271
Sequence    

Annotation

kegg
ID rcu:RCOM_1280790
description hypothetical protein
nr
ID XP_012079785.1
description PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KI90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15214 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38560: 631-1826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_010 0.0 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
2 Hb_007317_060 0.0780941644 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
3 Hb_008173_120 0.0955213712 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005117_010 0.095574827 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
5 Hb_015057_010 0.0974726023 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
6 Hb_009543_030 0.1020867203 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_007012_020 0.1058495261 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
8 Hb_000914_070 0.1065327543 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
9 Hb_000648_030 0.1068871249 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
10 Hb_002259_150 0.1072167831 - - BnaC04g40780D [Brassica napus]
11 Hb_011671_220 0.1087090569 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004453_150 0.1109615065 - - BnaC02g13240D [Brassica napus]
13 Hb_007193_100 0.1117646216 - - syntaxin family protein [Populus trichocarpa]
14 Hb_005656_050 0.1119599314 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
15 Hb_000364_150 0.1128860797 - - -
16 Hb_000684_230 0.1129680356 - - 40S ribosomal protein S23, putative [Ricinus communis]
17 Hb_000491_090 0.1142820269 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
18 Hb_000144_090 0.116523684 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
19 Hb_004055_140 0.1166868019 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_000347_200 0.1174159152 - - lsm1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000380_010 Hb_000380_010 Hb_007317_060 Hb_007317_060 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_015057_010 Hb_015057_010 Hb_000380_010--Hb_015057_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_007012_020 Hb_007012_020 Hb_000380_010--Hb_007012_020 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_007317_060--Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_007193_100 Hb_007193_100 Hb_008173_120--Hb_007193_100 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_011671_220 Hb_011671_220 Hb_005117_010--Hb_011671_220 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_009543_030--Hb_007193_100 Hb_009543_030--Hb_004453_150 Hb_009543_030--Hb_000684_230 Hb_006502_080 Hb_006502_080 Hb_007012_020--Hb_006502_080 Hb_007012_020--Hb_009543_030 Hb_005656_050 Hb_005656_050 Hb_007012_020--Hb_005656_050 Hb_067776_010 Hb_067776_010 Hb_007012_020--Hb_067776_010 Hb_007012_020--Hb_000684_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6096 3.05959 3.23195 14.3798 18.0836 60.4768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4072 32.2098 29.6146 14.2589 7.33864

CAGE analysis