Hb_000380_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig380: 19787-21601
Sequence    

Annotation

kegg
ID rcu:RCOM_0544970
description hypothetical protein
nr
ID XP_012065104.1
description PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38562: 19813-21182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_020 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
2 Hb_006594_020 0.1287907553 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
3 Hb_001279_130 0.1361038385 - - hypothetical protein L484_017676 [Morus notabilis]
4 Hb_000749_250 0.148119595 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
5 Hb_005614_050 0.1571809132 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
6 Hb_001143_090 0.1586548048 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
7 Hb_000638_020 0.1595696033 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
8 Hb_001545_060 0.1623792597 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_005539_240 0.1625911878 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
10 Hb_005211_070 0.1626600301 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
11 Hb_001213_120 0.1629762802 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
12 Hb_002759_240 0.1634557941 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
13 Hb_005841_040 0.1640819053 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
14 Hb_001232_130 0.1652236006 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
15 Hb_000676_240 0.1661681183 - - thioredoxin H-type 2 [Hevea brasiliensis]
16 Hb_000562_040 0.1681408444 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_012239_100 0.1733017258 - - hypothetical protein VITISV_043897 [Vitis vinifera]
18 Hb_010594_030 0.1742169612 - - -
19 Hb_000934_030 0.1757650698 - - -
20 Hb_002983_030 0.1768169935 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000380_020 Hb_000380_020 Hb_006594_020 Hb_006594_020 Hb_000380_020--Hb_006594_020 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000749_250 Hb_000749_250 Hb_000380_020--Hb_000749_250 Hb_005614_050 Hb_005614_050 Hb_000380_020--Hb_005614_050 Hb_001143_090 Hb_001143_090 Hb_000380_020--Hb_001143_090 Hb_000638_020 Hb_000638_020 Hb_000380_020--Hb_000638_020 Hb_006594_020--Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_017434_050 Hb_017434_050 Hb_006594_020--Hb_017434_050 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090 Hb_002182_090 Hb_002182_090 Hb_001279_130--Hb_002182_090 Hb_029243_040 Hb_029243_040 Hb_001279_130--Hb_029243_040 Hb_010594_030 Hb_010594_030 Hb_001279_130--Hb_010594_030 Hb_001102_250 Hb_001102_250 Hb_001279_130--Hb_001102_250 Hb_001279_130--Hb_006594_020 Hb_000749_250--Hb_001232_130 Hb_003943_030 Hb_003943_030 Hb_000749_250--Hb_003943_030 Hb_000749_250--Hb_001143_090 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_000363_200 Hb_000363_200 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_004453_140 Hb_004453_140 Hb_001143_090--Hb_004453_140 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_001143_090--Hb_003943_030 Hb_000193_240 Hb_000193_240 Hb_000638_020--Hb_000193_240 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_000638_020--Hb_004453_140 Hb_000638_020--Hb_163950_010 Hb_000832_230 Hb_000832_230 Hb_000638_020--Hb_000832_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20105 2.3087 0.732158 1.08643 11.6849 2.78682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.061 34.3177 31.5572 8.37942 0.643934

CAGE analysis