Hb_000380_130

Information

Type -
Description -
Location Contig380: 122019-125001
Sequence    

Annotation

kegg
ID rcu:RCOM_0543910
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID XP_002529414.1
description Phenylalanine ammonia-lyase, putative [Ricinus communis]
swissprot
ID P45726
description Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1
trembl
ID B9STU5
description Phenylalanine ammonia-lyase, putative OS=Ricinus communis GN=RCOM_0543910 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38565: 122028-125134 , PASA_asmbl_38566: 123947-124064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_130 0.0 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
2 Hb_074892_010 0.0724350169 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
3 Hb_033622_020 0.084264604 - - lipid binding protein, putative [Ricinus communis]
4 Hb_001218_070 0.0900673775 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
5 Hb_046770_010 0.09410632 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001597_110 0.0956719068 - - -
7 Hb_011671_420 0.1170620499 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
8 Hb_022815_020 0.1188355546 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
9 Hb_000422_020 0.1253899237 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
10 Hb_109673_010 0.1294814046 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_001172_030 0.1375856283 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
12 Hb_001900_130 0.1421126958 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
13 Hb_000683_010 0.1437186469 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
14 Hb_033843_020 0.1471037933 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
15 Hb_000575_110 0.1473750555 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
16 Hb_000659_010 0.1517103416 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
17 Hb_175968_010 0.1539048359 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
18 Hb_035726_020 0.1555182431 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
19 Hb_006970_100 0.1557939783 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_006651_010 0.155841877 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]

Gene co-expression network

sample Hb_000380_130 Hb_000380_130 Hb_074892_010 Hb_074892_010 Hb_000380_130--Hb_074892_010 Hb_033622_020 Hb_033622_020 Hb_000380_130--Hb_033622_020 Hb_001218_070 Hb_001218_070 Hb_000380_130--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_000380_130--Hb_046770_010 Hb_001597_110 Hb_001597_110 Hb_000380_130--Hb_001597_110 Hb_011671_420 Hb_011671_420 Hb_000380_130--Hb_011671_420 Hb_074892_010--Hb_001597_110 Hb_074892_010--Hb_033622_020 Hb_022815_020 Hb_022815_020 Hb_074892_010--Hb_022815_020 Hb_074892_010--Hb_001218_070 Hb_032631_080 Hb_032631_080 Hb_074892_010--Hb_032631_080 Hb_033622_020--Hb_001597_110 Hb_135554_010 Hb_135554_010 Hb_033622_020--Hb_135554_010 Hb_006970_100 Hb_006970_100 Hb_033622_020--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_033622_020--Hb_006651_010 Hb_109673_010 Hb_109673_010 Hb_001218_070--Hb_109673_010 Hb_001218_070--Hb_046770_010 Hb_001545_270 Hb_001545_270 Hb_001218_070--Hb_001545_270 Hb_001218_070--Hb_011671_420 Hb_001218_070--Hb_033622_020 Hb_046770_010--Hb_109673_010 Hb_003189_020 Hb_003189_020 Hb_046770_010--Hb_003189_020 Hb_005550_040 Hb_005550_040 Hb_046770_010--Hb_005550_040 Hb_105134_010 Hb_105134_010 Hb_046770_010--Hb_105134_010 Hb_006573_250 Hb_006573_250 Hb_001597_110--Hb_006573_250 Hb_001597_110--Hb_001218_070 Hb_000457_130 Hb_000457_130 Hb_001597_110--Hb_000457_130 Hb_011671_420--Hb_046770_010 Hb_008768_010 Hb_008768_010 Hb_011671_420--Hb_008768_010 Hb_011671_420--Hb_109673_010 Hb_029769_010 Hb_029769_010 Hb_011671_420--Hb_029769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00837854 10.446 12.0396 15.3264 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760925 0.0149687 0.0854827 176.715 49.5563

CAGE analysis