Hb_000380_180

Information

Type -
Description -
Location Contig380: 181604-192030
Sequence    

Annotation

kegg
ID rcu:RCOM_0033790
description kinase, putative (EC:2.7.11.30)
nr
ID XP_002529929.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8VYY5
description Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana GN=NCRK PE=1 SV=1
trembl
ID B9SVB0
description Kinase, putative OS=Ricinus communis GN=RCOM_0033790 PE=3 SV=1
Gene Ontology
ID GO:0010008
description receptor-like serine threonine-protein kinase ncrk isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38573: 189717-192371
cDNA
(Sanger)
(ID:Location)		 033_M17.ab1: 189717-190624 , 051_O12.ab1: 189731-190696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_180 0.0 - - kinase, putative [Ricinus communis]
2 Hb_003497_030 0.0867767844 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_001767_010 0.1083011835 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
4 Hb_000427_030 0.1171006676 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000260_060 0.1182536327 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
6 Hb_002739_110 0.1246011659 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
7 Hb_000249_130 0.1261183133 - - hypothetical protein RCOM_0254640 [Ricinus communis]
8 Hb_000025_480 0.1274112622 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
9 Hb_027751_020 0.1282852942 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
10 Hb_002357_040 0.1335058773 - - latex-abundant protein [Hevea brasiliensis]
11 Hb_005779_100 0.1364750557 - - DNAJ [Theobroma cacao]
12 Hb_024952_010 0.1389832631 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
13 Hb_001396_230 0.1397563342 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
14 Hb_103873_010 0.1426375113 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
15 Hb_000387_080 0.1427150441 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
16 Hb_004800_160 0.1435424808 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
17 Hb_001606_070 0.144361248 - - fimbrin, putative [Ricinus communis]
18 Hb_011174_070 0.1445133875 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
19 Hb_001999_060 0.14535705 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
20 Hb_000249_110 0.1457114902 - - hypothetical protein JCGZ_22462 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_180 Hb_000380_180 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130 Hb_001606_070 Hb_001606_070 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_003497_030--Hb_000260_060 Hb_002835_170 Hb_002835_170 Hb_003497_030--Hb_002835_170 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_001767_010--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_001677_110 Hb_001677_110 Hb_000260_060--Hb_001677_110 Hb_024952_010 Hb_024952_010 Hb_000260_060--Hb_024952_010 Hb_010174_120 Hb_010174_120 Hb_000260_060--Hb_010174_120 Hb_002498_100 Hb_002498_100 Hb_000260_060--Hb_002498_100 Hb_001396_230 Hb_001396_230 Hb_002739_110--Hb_001396_230 Hb_001004_040 Hb_001004_040 Hb_002739_110--Hb_001004_040 Hb_152439_020 Hb_152439_020 Hb_002739_110--Hb_152439_020 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_000249_130--Hb_003497_030 Hb_000249_130--Hb_024952_010 Hb_000249_130--Hb_001606_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1118 0.51279 0.943558 3.9809 24.4464 32.1584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0001 14.5681 51.8638 5.28308 1.20012

CAGE analysis