Hb_000380_210

Information

Type -
Description -
Location Contig380: 203997-216679
Sequence    

Annotation

kegg
ID tcc:TCM_042082
description Cyclic nucleotide-gated channel 15
nr
ID XP_007016780.1
description Cyclic nucleotide-gated channel 15 [Theobroma cacao]
swissprot
ID Q9SL29
description Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1
trembl
ID A0A061H096
description Cyclic nucleotide-gated channel 15 OS=Theobroma cacao GN=TCM_042082 PE=4 SV=1
Gene Ontology
ID GO:0005249
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_210 0.0 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
2 Hb_118707_020 0.1069590791 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000967_010 0.1133923082 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
4 Hb_021418_010 0.1189463812 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
5 Hb_008727_030 0.1194257633 - - conserved hypothetical protein [Ricinus communis]
6 Hb_018133_110 0.1221936832 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000032_560 0.1224001687 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
8 Hb_005144_180 0.1238617376 - - PREDICTED: protein enabled homolog [Populus euphratica]
9 Hb_003090_230 0.1295709172 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002301_420 0.1322077499 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
11 Hb_135811_040 0.1408231975 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009711_040 0.141161245 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
13 Hb_000347_230 0.1430073306 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
14 Hb_011452_020 0.144182684 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
15 Hb_002597_010 0.1447404515 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
16 Hb_003435_070 0.1473522759 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
17 Hb_012368_080 0.1496293774 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
18 Hb_188923_010 0.1501186202 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_001596_030 0.1514312696 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
20 Hb_098030_010 0.1520528488 - - hypothetical protein JCGZ_06251 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_210 Hb_000380_210 Hb_118707_020 Hb_118707_020 Hb_000380_210--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_008727_030 Hb_008727_030 Hb_000380_210--Hb_008727_030 Hb_018133_110 Hb_018133_110 Hb_000380_210--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_000380_210--Hb_000032_560 Hb_118707_020--Hb_000967_010 Hb_118707_020--Hb_008727_030 Hb_188923_010 Hb_188923_010 Hb_118707_020--Hb_188923_010 Hb_135811_040 Hb_135811_040 Hb_118707_020--Hb_135811_040 Hb_003435_070 Hb_003435_070 Hb_118707_020--Hb_003435_070 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_008727_030 Hb_000967_010--Hb_003435_070 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_000967_010--Hb_135811_040 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_081282_010 Hb_081282_010 Hb_021418_010--Hb_081282_010 Hb_001596_030 Hb_001596_030 Hb_021418_010--Hb_001596_030 Hb_021418_010--Hb_011452_020 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_003090_230 Hb_003090_230 Hb_021418_010--Hb_003090_230 Hb_008727_030--Hb_003435_070 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_000032_560--Hb_000580_070 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0065824 0.104506 0.0869626 0.614891 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133321 0.0157389 0 1.11408 0.0451948

CAGE analysis