Hb_000381_030

Information

Type -
Description -
Location Contig381: 52429-53148
Sequence    

Annotation

kegg
ID rcu:RCOM_1223710
description aquaporin sip2.1, putative
nr
ID XP_012089871.1
description PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
swissprot
ID Q9ATM2
description Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1
trembl
ID B9SFQ3
description Aquaporin sip2.1, putative OS=Ricinus communis GN=RCOM_1223710 PE=3 SV=1
Gene Ontology
ID GO:0016020
description aquaporin sip1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38607: 52851-53155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000381_030 0.0 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
2 Hb_001331_040 0.0225173043 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
3 Hb_006949_030 0.0693619568 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_006938_010 0.0749593852 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_000010_200 0.0934376502 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001013_040 0.1020860268 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
7 Hb_007894_260 0.1021657486 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_007875_070 0.1131185081 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
9 Hb_004884_200 0.1141229356 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
10 Hb_005010_040 0.1167368028 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
11 Hb_002391_350 0.1184726368 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
12 Hb_006569_110 0.1197306705 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001856_060 0.1200532223 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_009627_040 0.1201822225 - - Lipase class 3-related protein, putative [Theobroma cacao]
15 Hb_000254_040 0.1224067273 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
16 Hb_002150_010 0.1227332771 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
17 Hb_002542_090 0.1248714294 - - Potassium transporter, putative [Ricinus communis]
18 Hb_002686_390 0.1264248685 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
19 Hb_004574_010 0.1287831413 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_001266_020 0.1297392377 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]

Gene co-expression network

sample Hb_000381_030 Hb_000381_030 Hb_001331_040 Hb_001331_040 Hb_000381_030--Hb_001331_040 Hb_006949_030 Hb_006949_030 Hb_000381_030--Hb_006949_030 Hb_006938_010 Hb_006938_010 Hb_000381_030--Hb_006938_010 Hb_000010_200 Hb_000010_200 Hb_000381_030--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_000381_030--Hb_001013_040 Hb_007894_260 Hb_007894_260 Hb_000381_030--Hb_007894_260 Hb_001331_040--Hb_006949_030 Hb_001331_040--Hb_006938_010 Hb_001331_040--Hb_000010_200 Hb_001331_040--Hb_001013_040 Hb_005010_040 Hb_005010_040 Hb_001331_040--Hb_005010_040 Hb_006949_030--Hb_006938_010 Hb_001621_020 Hb_001621_020 Hb_006949_030--Hb_001621_020 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_006569_110 Hb_006569_110 Hb_006938_010--Hb_006569_110 Hb_006938_010--Hb_007894_260 Hb_002542_090 Hb_002542_090 Hb_006938_010--Hb_002542_090 Hb_000010_200--Hb_002686_390 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_000010_200--Hb_007894_260 Hb_001856_060 Hb_001856_060 Hb_001013_040--Hb_001856_060 Hb_007875_070 Hb_007875_070 Hb_001013_040--Hb_007875_070 Hb_012019_020 Hb_012019_020 Hb_001013_040--Hb_012019_020 Hb_002171_070 Hb_002171_070 Hb_001013_040--Hb_002171_070 Hb_007894_260--Hb_006569_110 Hb_003060_080 Hb_003060_080 Hb_007894_260--Hb_003060_080 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.64523 0.841707 0.546722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.56298 0.728394

CAGE analysis