Hb_000382_020

Information

Type -
Description -
Location Contig382: 19483-26777
Sequence    

Annotation

kegg
ID vvi:100248351
description uncharacterized LOC100248351
nr
ID XP_012071628.1
description PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
swissprot
ID Q04264
description Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1
trembl
ID F6HYI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00050 PE=4 SV=1
Gene Ontology
ID GO:0044763
description neurofilament heavy polypeptide-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38654: 20630-22335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000382_020 0.0 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
2 Hb_000771_060 0.132153837 - - PREDICTED: spermine synthase [Jatropha curcas]
3 Hb_002249_070 0.1388509103 - - gcn4-complementing protein, putative [Ricinus communis]
4 Hb_028049_010 0.1481463997 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_001242_050 0.1701833593 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000270_740 0.1724414813 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
7 Hb_007441_240 0.1736348137 - - ethphon-induced protein [Hevea brasiliensis]
8 Hb_004007_110 0.1767032922 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
9 Hb_002783_110 0.1795028645 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_000815_290 0.1798519391 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_012807_130 0.1809534649 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
12 Hb_000059_010 0.1814108056 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000260_280 0.1819299994 - - auxin:hydrogen symporter, putative [Ricinus communis]
14 Hb_075247_010 0.1830858536 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
15 Hb_005496_090 0.1832663879 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
16 Hb_012305_130 0.1835433289 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
17 Hb_000110_120 0.1847678817 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
18 Hb_006573_290 0.1863210071 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
19 Hb_000008_400 0.1875723298 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
20 Hb_001153_120 0.1898523806 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]

Gene co-expression network

sample Hb_000382_020 Hb_000382_020 Hb_000771_060 Hb_000771_060 Hb_000382_020--Hb_000771_060 Hb_002249_070 Hb_002249_070 Hb_000382_020--Hb_002249_070 Hb_028049_010 Hb_028049_010 Hb_000382_020--Hb_028049_010 Hb_001242_050 Hb_001242_050 Hb_000382_020--Hb_001242_050 Hb_000270_740 Hb_000270_740 Hb_000382_020--Hb_000270_740 Hb_007441_240 Hb_007441_240 Hb_000382_020--Hb_007441_240 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_000270_180 Hb_000270_180 Hb_002249_070--Hb_000270_180 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030 Hb_028049_010--Hb_012305_130 Hb_028049_010--Hb_000110_120 Hb_004007_110 Hb_004007_110 Hb_028049_010--Hb_004007_110 Hb_028049_010--Hb_021409_080 Hb_028049_010--Hb_000428_060 Hb_000788_060 Hb_000788_060 Hb_001242_050--Hb_000788_060 Hb_001377_420 Hb_001377_420 Hb_001242_050--Hb_001377_420 Hb_005496_090 Hb_005496_090 Hb_001242_050--Hb_005496_090 Hb_000465_270 Hb_000465_270 Hb_001242_050--Hb_000465_270 Hb_075247_010 Hb_075247_010 Hb_001242_050--Hb_075247_010 Hb_158092_010 Hb_158092_010 Hb_001242_050--Hb_158092_010 Hb_000270_740--Hb_007441_240 Hb_004787_040 Hb_004787_040 Hb_000270_740--Hb_004787_040 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_007441_240--Hb_000739_140 Hb_000317_420 Hb_000317_420 Hb_007441_240--Hb_000317_420 Hb_007441_240--Hb_028049_010 Hb_007441_240--Hb_000771_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0260328 0.293974 0.684163 1.50803 0.0116331 0.0556659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.871951 1.10182 1.09927 0.687483 0.393628

CAGE analysis