Hb_000382_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig382: 44155-47771
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11800g
description POPTRDRAFT_669610; hypothetical protein
nr
ID XP_002325140.2
description hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
swissprot
ID Q9ZUG9
description Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1
trembl
ID B9IMF5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11800g PE=4 SV=2
Gene Ontology
ID GO:0046983
description transcription factor bhlh66-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38656: 44641-47696 , PASA_asmbl_38657: 45627-45888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000382_030 0.0 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
2 Hb_001377_130 0.0676811788 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
3 Hb_000237_070 0.0757866246 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_000318_050 0.0880407144 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
5 Hb_000085_220 0.092419948 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031862_020 0.0928933726 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_001123_170 0.0939290427 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000417_120 0.0995264533 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
9 Hb_005628_050 0.105325699 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
10 Hb_014361_020 0.1062079992 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
11 Hb_001538_050 0.1139652664 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
12 Hb_000092_030 0.1159640016 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
13 Hb_004166_020 0.1159723812 - - -
14 Hb_167272_010 0.1167800143 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
15 Hb_007894_030 0.118503793 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_003680_250 0.1190009579 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_005867_030 0.1197035642 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
18 Hb_004544_090 0.1204686483 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000477_110 0.1206194848 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
20 Hb_012098_180 0.121058487 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_000382_030 Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_000382_030--Hb_001377_130 Hb_000237_070 Hb_000237_070 Hb_000382_030--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_001123_170 Hb_001123_170 Hb_000382_030--Hb_001123_170 Hb_001377_130--Hb_001123_170 Hb_001377_130--Hb_000237_070 Hb_001377_130--Hb_000318_050 Hb_005628_050 Hb_005628_050 Hb_001377_130--Hb_005628_050 Hb_001538_050 Hb_001538_050 Hb_001377_130--Hb_001538_050 Hb_000237_070--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000237_070--Hb_000318_050 Hb_005463_070 Hb_005463_070 Hb_000318_050--Hb_005463_070 Hb_003387_080 Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_000318_050--Hb_001160_020 Hb_005016_080 Hb_005016_080 Hb_000318_050--Hb_005016_080 Hb_002010_100 Hb_002010_100 Hb_000318_050--Hb_002010_100 Hb_004166_020 Hb_004166_020 Hb_000085_220--Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_000085_220--Hb_014361_020 Hb_000092_030 Hb_000092_030 Hb_000085_220--Hb_000092_030 Hb_000085_220--Hb_167272_010 Hb_000085_220--Hb_031862_020 Hb_006269_010 Hb_006269_010 Hb_000085_220--Hb_006269_010 Hb_031862_020--Hb_167272_010 Hb_000501_040 Hb_000501_040 Hb_031862_020--Hb_000501_040 Hb_007420_010 Hb_007420_010 Hb_031862_020--Hb_007420_010 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230633 30.0327 22.0915 15.206 0.190339 0.0975903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0452622 0.0534204 0.13506 18.7243 9.445

CAGE analysis