Hb_000383_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig383: 11182-13266
Sequence    

Annotation

kegg
ID tcc:TCM_019825
description Cc-nbs-lrr resistance protein, putative
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000383_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_007320_020 0.1463528882 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
3 Hb_001971_020 0.1484670732 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
4 Hb_002003_040 0.1630856883 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
5 Hb_043939_010 0.1636887092 - - hypothetical protein B456_N011100 [Gossypium raimondii]
6 Hb_000264_340 0.170400073 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
7 Hb_005016_120 0.1757128666 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_000228_230 0.1777387856 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005306_020 0.1793603745 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
10 Hb_136880_010 0.1807171808 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_000603_120 0.1810518088 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_002420_010 0.1833516243 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_062229_010 0.183717137 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_001357_360 0.1855774961 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000059_080 0.1859495736 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
16 Hb_003212_010 0.1866777712 - - sucrose transporter 4 [Hevea brasiliensis]
17 Hb_010261_030 0.1870744997 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_001391_100 0.1873828807 - - AMP dependent ligase, putative [Ricinus communis]
19 Hb_054865_030 0.1874282155 - - -
20 Hb_000563_120 0.187498349 - - hypothetical protein JCGZ_18936 [Jatropha curcas]

Gene co-expression network

sample Hb_000383_020 Hb_000383_020 Hb_007320_020 Hb_007320_020 Hb_000383_020--Hb_007320_020 Hb_001971_020 Hb_001971_020 Hb_000383_020--Hb_001971_020 Hb_002003_040 Hb_002003_040 Hb_000383_020--Hb_002003_040 Hb_043939_010 Hb_043939_010 Hb_000383_020--Hb_043939_010 Hb_000264_340 Hb_000264_340 Hb_000383_020--Hb_000264_340 Hb_005016_120 Hb_005016_120 Hb_000383_020--Hb_005016_120 Hb_000685_040 Hb_000685_040 Hb_007320_020--Hb_000685_040 Hb_007320_020--Hb_001971_020 Hb_000059_080 Hb_000059_080 Hb_007320_020--Hb_000059_080 Hb_003767_010 Hb_003767_010 Hb_007320_020--Hb_003767_010 Hb_010812_140 Hb_010812_140 Hb_007320_020--Hb_010812_140 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_001971_020--Hb_000264_340 Hb_002420_010 Hb_002420_010 Hb_002003_040--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_000261_320 Hb_000261_320 Hb_002003_040--Hb_000261_320 Hb_002833_020 Hb_002833_020 Hb_002003_040--Hb_002833_020 Hb_082683_010 Hb_082683_010 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_043939_010--Hb_000563_120 Hb_062229_010 Hb_062229_010 Hb_043939_010--Hb_062229_010 Hb_006615_190 Hb_006615_190 Hb_043939_010--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_043939_010--Hb_014361_130 Hb_000172_010 Hb_000172_010 Hb_043939_010--Hb_000172_010 Hb_009247_030 Hb_009247_030 Hb_043939_010--Hb_009247_030 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_005470_040 Hb_005470_040 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_001677_230 Hb_001677_230 Hb_005016_120--Hb_001677_230 Hb_001619_010 Hb_001619_010 Hb_005016_120--Hb_001619_010 Hb_002888_060 Hb_002888_060 Hb_005016_120--Hb_002888_060 Hb_005016_120--Hb_000264_340 Hb_005016_120--Hb_005470_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102993 0.0901821 0.00764488 0.0391345 0 0.00901505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0879742 0.0777848

CAGE analysis