Hb_000384_050

Information

Type -
Description -
Location Contig384: 70411-76071
Sequence    

Annotation

kegg
ID pop:POPTR_0077s002402
description hypothetical protein
nr
ID XP_006388913.1
description hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
swissprot
ID F4KHH8
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID U7E0A7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0077s002402g PE=4 SV=1
Gene Ontology
ID GO:0043531
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38686: 73660-73785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_050 0.0 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
2 Hb_000343_100 0.1554781174 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
3 Hb_002110_260 0.159374393 - - zinc finger protein, putative [Ricinus communis]
4 Hb_002043_010 0.1948879532 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_003517_020 0.2064627339 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
6 Hb_012565_080 0.2075418409 - - serine/threonine kinase, putative [Ricinus communis]
7 Hb_102011_010 0.2078233952 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_000928_040 0.2100880557 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001946_150 0.2152214028 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000645_210 0.2212894367 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
11 Hb_000789_240 0.2270593346 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
12 Hb_000098_310 0.2280188147 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
13 Hb_005389_190 0.2295336807 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_000093_150 0.2308184116 - - 6-phosphogluconolactonase, putative [Ricinus communis]
15 Hb_053125_010 0.2308346841 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
16 Hb_007919_040 0.2349513042 - - PREDICTED: protein LYK5 [Jatropha curcas]
17 Hb_003576_050 0.2355778011 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_027760_090 0.2369215734 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_001780_150 0.239518261 - - ceramidase, putative [Ricinus communis]
20 Hb_000940_150 0.2399064173 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_050 Hb_000384_050 Hb_000343_100 Hb_000343_100 Hb_000384_050--Hb_000343_100 Hb_002110_260 Hb_002110_260 Hb_000384_050--Hb_002110_260 Hb_002043_010 Hb_002043_010 Hb_000384_050--Hb_002043_010 Hb_003517_020 Hb_003517_020 Hb_000384_050--Hb_003517_020 Hb_012565_080 Hb_012565_080 Hb_000384_050--Hb_012565_080 Hb_102011_010 Hb_102011_010 Hb_000384_050--Hb_102011_010 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_004143_120 Hb_004143_120 Hb_000343_100--Hb_004143_120 Hb_000181_020 Hb_000181_020 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_002110_260--Hb_002043_010 Hb_001946_150 Hb_001946_150 Hb_002110_260--Hb_001946_150 Hb_002110_260--Hb_012565_080 Hb_000645_210 Hb_000645_210 Hb_002110_260--Hb_000645_210 Hb_000928_040 Hb_000928_040 Hb_002110_260--Hb_000928_040 Hb_002043_010--Hb_012565_080 Hb_002524_030 Hb_002524_030 Hb_002043_010--Hb_002524_030 Hb_002827_020 Hb_002827_020 Hb_002043_010--Hb_002827_020 Hb_000036_050 Hb_000036_050 Hb_002043_010--Hb_000036_050 Hb_000313_370 Hb_000313_370 Hb_003517_020--Hb_000313_370 Hb_003576_050 Hb_003576_050 Hb_003517_020--Hb_003576_050 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_007919_040 Hb_007919_040 Hb_003517_020--Hb_007919_040 Hb_003517_020--Hb_002524_030 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_020178_060 Hb_020178_060 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_012565_080--Hb_002827_020 Hb_000283_150 Hb_000283_150 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_001485_010 Hb_001485_010 Hb_102011_010--Hb_001485_010 Hb_053125_010 Hb_053125_010 Hb_102011_010--Hb_053125_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_136880_010 Hb_136880_010 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0879246 2.70871 0.102677 0.690434 1.05789 0.769093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.606254 0.406898 0.427897 6.87038 1.49093

CAGE analysis