Hb_000384_070

Information

Type -
Description -
Location Contig384: 106335-111670
Sequence    

Annotation

kegg
ID rcu:RCOM_1329390
description hypothetical protein
nr
ID XP_002521748.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6X9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38688: 106385-111444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002995_050 0.0737878536 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
3 Hb_002042_150 0.0797105362 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
4 Hb_001489_110 0.0875100849 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
5 Hb_002045_070 0.0895898059 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
6 Hb_004607_090 0.0904283942 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
7 Hb_002133_020 0.091512151 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004108_220 0.0923907269 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
9 Hb_001269_190 0.0927491733 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
10 Hb_000087_070 0.0933961169 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_045003_010 0.0946443244 - - Stomatin-1, putative [Ricinus communis]
12 Hb_000359_090 0.096286786 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
13 Hb_005504_050 0.0971242429 - - putative protein [Arabidopsis thaliana]
14 Hb_002301_160 0.0991526057 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
15 Hb_000258_240 0.1020856572 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_000179_270 0.102500928 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
17 Hb_000365_270 0.1028831755 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
18 Hb_004176_070 0.1036186861 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
19 Hb_185255_010 0.1041614078 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_000220_100 0.1044266545 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_070 Hb_000384_070 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_002133_020 Hb_002133_020 Hb_000384_070--Hb_002133_020 Hb_002995_050--Hb_001489_110 Hb_001269_190 Hb_001269_190 Hb_002995_050--Hb_001269_190 Hb_045003_010 Hb_045003_010 Hb_002995_050--Hb_045003_010 Hb_000087_070 Hb_000087_070 Hb_002995_050--Hb_000087_070 Hb_001353_010 Hb_001353_010 Hb_002995_050--Hb_001353_010 Hb_002042_150--Hb_045003_010 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001489_110--Hb_001353_010 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_000603_160 Hb_000603_160 Hb_004607_090--Hb_000603_160 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_001747_030 Hb_001747_030 Hb_002133_020--Hb_001747_030 Hb_000258_240 Hb_000258_240 Hb_002133_020--Hb_000258_240 Hb_000359_090 Hb_000359_090 Hb_002133_020--Hb_000359_090 Hb_019181_030 Hb_019181_030 Hb_002133_020--Hb_019181_030 Hb_002781_030 Hb_002781_030 Hb_002133_020--Hb_002781_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.764 3.78113 3.55842 11.2641 2.65733 3.71041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75357 7.67183 3.77617 3.87445 3.93411

CAGE analysis