Hb_000384_100

Information

Type -
Description -
Location Contig384: 140154-148822
Sequence    

Annotation

kegg
ID rcu:RCOM_1329440
description hydrolase, putative
nr
ID XP_002521753.1
description hydrolase, putative [Ricinus communis]
swissprot
ID Q96EY9
description Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1
trembl
ID B9S6Y4
description Hydrolase, putative OS=Ricinus communis GN=RCOM_1329440 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable inactive trna-specific adenosine deaminase-like protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38694: 140500-142675 , PASA_asmbl_38695: 146699-147441 , PASA_asmbl_38696: 148372-148756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_100 0.0 - - hydrolase, putative [Ricinus communis]
2 Hb_000479_090 0.0502260393 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
3 Hb_000059_370 0.0627553718 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
4 Hb_010068_020 0.064819511 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
5 Hb_002183_090 0.0650518507 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
6 Hb_000230_510 0.0680417715 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
7 Hb_000920_110 0.0711025254 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
8 Hb_159809_020 0.073282483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002056_050 0.0736075004 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
10 Hb_004567_120 0.0752498426 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
11 Hb_000058_060 0.0755903039 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
12 Hb_004375_100 0.075961747 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
13 Hb_000251_130 0.0775847589 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
14 Hb_002226_070 0.0776163149 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
15 Hb_033834_040 0.0779615283 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006031_020 0.0779876504 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
17 Hb_026549_040 0.0784558959 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
18 Hb_012753_160 0.0786214988 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_002686_020 0.0802292424 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
20 Hb_012675_060 0.0803901853 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]

Gene co-expression network

sample Hb_000384_100 Hb_000384_100 Hb_000479_090 Hb_000479_090 Hb_000384_100--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000920_110 Hb_000920_110 Hb_000384_100--Hb_000920_110 Hb_000479_090--Hb_000059_370 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_004375_100 Hb_004375_100 Hb_010068_020--Hb_004375_100 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_000085_050 Hb_000085_050 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_005289_030 Hb_005289_030 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63033 2.21942 2.16766 2.37818 3.24941 4.60261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59634 9.66145 5.30049 3.6626 3.12669

CAGE analysis