Hb_000386_040

Information

Type -
Description -
Location Contig386: 62907-69052
Sequence    

Annotation

kegg
ID rcu:RCOM_1267360
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_002530551.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID B9DFG5
description PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana GN=PTI13 PE=1 SV=1
trembl
ID B9SX32
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_1267360 PE=3 SV=1
Gene Ontology
ID GO:0005622
description pti1-like tyrosine-protein kinase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38830: 63009-69008 , PASA_asmbl_38831: 64986-68489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000386_040 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_000049_040 0.0607803708 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
3 Hb_003038_030 0.0779431391 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
4 Hb_000943_070 0.07844594 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
5 Hb_001246_100 0.0789611075 - - Ras-related small GTP-binding family protein [Theobroma cacao]
6 Hb_000188_100 0.0815265594 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
7 Hb_000172_370 0.0822903894 - - -
8 Hb_006447_010 0.0832300148 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
9 Hb_010120_030 0.0859208108 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
10 Hb_079820_010 0.0868520824 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
11 Hb_003005_020 0.0874432142 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
12 Hb_141131_010 0.0879126595 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
13 Hb_000500_130 0.0881092244 - - small GTPase [Hevea brasiliensis]
14 Hb_002400_220 0.0881497952 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_001124_210 0.0896643083 - - conserved hypothetical protein [Ricinus communis]
16 Hb_182026_020 0.0903718722 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_002215_050 0.0904967912 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_005063_040 0.0905233526 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
19 Hb_000019_230 0.092132212 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
20 Hb_001030_120 0.0929116455 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000386_040 Hb_000386_040 Hb_000049_040 Hb_000049_040 Hb_000386_040--Hb_000049_040 Hb_003038_030 Hb_003038_030 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_001246_100 Hb_001246_100 Hb_000386_040--Hb_001246_100 Hb_000188_100 Hb_000188_100 Hb_000386_040--Hb_000188_100 Hb_000172_370 Hb_000172_370 Hb_000386_040--Hb_000172_370 Hb_010120_030 Hb_010120_030 Hb_000049_040--Hb_010120_030 Hb_182026_020 Hb_182026_020 Hb_000049_040--Hb_182026_020 Hb_002014_080 Hb_002014_080 Hb_000049_040--Hb_002014_080 Hb_007919_050 Hb_007919_050 Hb_000049_040--Hb_007919_050 Hb_010174_130 Hb_010174_130 Hb_000049_040--Hb_010174_130 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_003642_060 Hb_003642_060 Hb_000943_070--Hb_003642_060 Hb_005306_110 Hb_005306_110 Hb_000943_070--Hb_005306_110 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_000787_110 Hb_000787_110 Hb_000188_100--Hb_000787_110 Hb_003120_060 Hb_003120_060 Hb_000188_100--Hb_003120_060 Hb_000188_100--Hb_000019_230 Hb_000188_100--Hb_003038_030 Hb_079820_010 Hb_079820_010 Hb_000188_100--Hb_079820_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.441 38.4555 29.4618 51.7429 137.149 165.435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.285 100.758 107.277 23.5403 16.8398

CAGE analysis