Hb_000386_050

Information

Type -
Description -
Location Contig386: 75317-89603
Sequence    

Annotation

kegg
ID rcu:RCOM_1267040
description isopropylmalate synthase, putative (EC:2.3.3.13)
nr
ID XP_012066238.1
description PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9C550
description 2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1
trembl
ID A0A067L330
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23808 PE=3 SV=1
Gene Ontology
ID GO:0009941
description 2-isopropylmalate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000386_050 0.0 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
2 Hb_004007_200 0.1042678768 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
3 Hb_000800_010 0.1231763496 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
4 Hb_187959_010 0.1440629179 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
5 Hb_006414_010 0.1509303743 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
6 Hb_001054_060 0.1530632498 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
7 Hb_012132_020 0.1572233511 - - glutamine synthetase [Hevea brasiliensis]
8 Hb_000203_210 0.1601099402 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
9 Hb_000416_060 0.1648765524 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
10 Hb_005305_030 0.1655784909 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
11 Hb_005588_120 0.165703973 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000032_600 0.1668546979 - - PREDICTED: B2 protein [Jatropha curcas]
13 Hb_000622_060 0.1672892925 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
14 Hb_004129_010 0.1691206742 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_003030_010 0.1699717361 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
16 Hb_000008_060 0.1720088552 - - protein binding protein, putative [Ricinus communis]
17 Hb_007894_070 0.1739949397 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
18 Hb_067664_010 0.1739987231 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_000115_360 0.1758169076 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_000465_450 0.1792619304 - - triacylglycerol lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000386_050 Hb_000386_050 Hb_004007_200 Hb_004007_200 Hb_000386_050--Hb_004007_200 Hb_000800_010 Hb_000800_010 Hb_000386_050--Hb_000800_010 Hb_187959_010 Hb_187959_010 Hb_000386_050--Hb_187959_010 Hb_006414_010 Hb_006414_010 Hb_000386_050--Hb_006414_010 Hb_001054_060 Hb_001054_060 Hb_000386_050--Hb_001054_060 Hb_012132_020 Hb_012132_020 Hb_000386_050--Hb_012132_020 Hb_004007_200--Hb_187959_010 Hb_004007_200--Hb_001054_060 Hb_004007_200--Hb_000800_010 Hb_002518_180 Hb_002518_180 Hb_004007_200--Hb_002518_180 Hb_004007_200--Hb_006414_010 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_000800_010--Hb_006414_010 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_187959_010--Hb_001054_060 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_005183_040 Hb_005183_040 Hb_012132_020--Hb_005183_040 Hb_012132_020--Hb_000210_040 Hb_164945_020 Hb_164945_020 Hb_012132_020--Hb_164945_020 Hb_005493_010 Hb_005493_010 Hb_012132_020--Hb_005493_010 Hb_002716_110 Hb_002716_110 Hb_012132_020--Hb_002716_110 Hb_002817_050 Hb_002817_050 Hb_012132_020--Hb_002817_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12046 11.9573 6.29227 12.353 0.136192 0.117591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13344 4.38504 2.34889 9.43699 17.7315

CAGE analysis