Hb_000387_080

Information

Type -
Description -
Location Contig387: 208216-214462
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22260g
description POPTRDRAFT_751929; hypothetical protein
nr
ID XP_012066357.1
description PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067L3C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23908 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein iq-domain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38862: 207905-242560
cDNA
(Sanger)
(ID:Location)		 007_D02.ab1: 207915-208886

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000387_080 0.0 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
2 Hb_003057_120 0.0754119584 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_001366_220 0.0755613941 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000057_060 0.0756102511 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
5 Hb_010174_120 0.0808178321 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
6 Hb_011174_070 0.0817102664 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
7 Hb_006602_020 0.0831260753 - - unknown [Medicago truncatula]
8 Hb_000771_140 0.0840354978 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
9 Hb_002506_010 0.0842352172 - - choline transporter-related family protein [Populus trichocarpa]
10 Hb_002357_040 0.0854957658 - - latex-abundant protein [Hevea brasiliensis]
11 Hb_000538_210 0.0878437547 - - ATP binding protein, putative [Ricinus communis]
12 Hb_006787_040 0.088223849 - - polyadenylate-binding protein, putative [Ricinus communis]
13 Hb_009510_030 0.0902744701 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
14 Hb_000696_110 0.0905390489 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
15 Hb_114684_020 0.0905739218 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_001981_090 0.0914739525 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
17 Hb_005245_090 0.0938276375 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
18 Hb_005779_100 0.0946767722 - - DNAJ [Theobroma cacao]
19 Hb_003001_030 0.0950942468 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_000849_040 0.0965608206 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000387_080 Hb_000387_080 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_003057_120--Hb_011174_070 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_003057_120--Hb_000805_090 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_011174_070--Hb_000057_060 Hb_011174_070--Hb_000805_090 Hb_000025_480 Hb_000025_480 Hb_011174_070--Hb_000025_480 Hb_000700_090 Hb_000700_090 Hb_006602_020--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_006602_020--Hb_006602_010 Hb_005539_290 Hb_005539_290 Hb_006602_020--Hb_005539_290 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_001902_050 Hb_001902_050 Hb_006602_020--Hb_001902_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
569.375 51.7801 33.9246 49.2625 527.265 636.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
636.168 366.078 719.502 95.9041 46.7698

CAGE analysis