Hb_000387_100

Information

Type -
Description -
Location Contig387: 232642-242993
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38862: 207905-242560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000387_100 0.0 - - -
2 Hb_001221_510 0.164312254 - - Protein HVA22, putative [Ricinus communis]
3 Hb_000690_070 0.1649813487 - - -
4 Hb_003096_030 0.1660728744 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
5 Hb_001396_220 0.1685203439 - - nuclear transport factor, putative [Ricinus communis]
6 Hb_000329_600 0.184040575 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
7 Hb_000567_250 0.1861776909 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
8 Hb_111648_010 0.190461545 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
9 Hb_000032_220 0.1927983475 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
10 Hb_001396_230 0.1960452404 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_003147_050 0.1962327392 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_145226_010 0.1988025117 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
13 Hb_007810_030 0.1989009707 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
14 Hb_002400_090 0.1994848368 - - -
15 Hb_005701_010 0.2010635912 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
16 Hb_001173_040 0.2019763745 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_000078_010 0.2044727338 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
18 Hb_000491_090 0.2045132133 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
19 Hb_003030_080 0.2051996493 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_015934_020 0.2057146361 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]

Gene co-expression network

sample Hb_000387_100 Hb_000387_100 Hb_001221_510 Hb_001221_510 Hb_000387_100--Hb_001221_510 Hb_000690_070 Hb_000690_070 Hb_000387_100--Hb_000690_070 Hb_003096_030 Hb_003096_030 Hb_000387_100--Hb_003096_030 Hb_001396_220 Hb_001396_220 Hb_000387_100--Hb_001396_220 Hb_000329_600 Hb_000329_600 Hb_000387_100--Hb_000329_600 Hb_000567_250 Hb_000567_250 Hb_000387_100--Hb_000567_250 Hb_116264_010 Hb_116264_010 Hb_001221_510--Hb_116264_010 Hb_000491_090 Hb_000491_090 Hb_001221_510--Hb_000491_090 Hb_111648_010 Hb_111648_010 Hb_001221_510--Hb_111648_010 Hb_001221_510--Hb_001396_220 Hb_004448_020 Hb_004448_020 Hb_001221_510--Hb_004448_020 Hb_000048_050 Hb_000048_050 Hb_001221_510--Hb_000048_050 Hb_023292_010 Hb_023292_010 Hb_000690_070--Hb_023292_010 Hb_000690_070--Hb_003096_030 Hb_005701_010 Hb_005701_010 Hb_000690_070--Hb_005701_010 Hb_100804_010 Hb_100804_010 Hb_000690_070--Hb_100804_010 Hb_001073_050 Hb_001073_050 Hb_000690_070--Hb_001073_050 Hb_003147_050 Hb_003147_050 Hb_003096_030--Hb_003147_050 Hb_012423_050 Hb_012423_050 Hb_003096_030--Hb_012423_050 Hb_003096_030--Hb_005701_010 Hb_001538_140 Hb_001538_140 Hb_003096_030--Hb_001538_140 Hb_002290_040 Hb_002290_040 Hb_003096_030--Hb_002290_040 Hb_001427_230 Hb_001427_230 Hb_003096_030--Hb_001427_230 Hb_000032_220 Hb_000032_220 Hb_001396_220--Hb_000032_220 Hb_001473_130 Hb_001473_130 Hb_001396_220--Hb_001473_130 Hb_015934_020 Hb_015934_020 Hb_001396_220--Hb_015934_020 Hb_002352_010 Hb_002352_010 Hb_001396_220--Hb_002352_010 Hb_005000_290 Hb_005000_290 Hb_001396_220--Hb_005000_290 Hb_001396_220--Hb_000329_600 Hb_000329_600--Hb_005000_290 Hb_000329_600--Hb_015934_020 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_000249_130 Hb_000249_130 Hb_000567_250--Hb_000249_130 Hb_003030_080 Hb_003030_080 Hb_000567_250--Hb_003030_080 Hb_000567_250--Hb_004453_140 Hb_002685_090 Hb_002685_090 Hb_000567_250--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000567_250--Hb_000041_070 Hb_017124_020 Hb_017124_020 Hb_000567_250--Hb_017124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.266738 0 0 0 0.256548 0.963856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.929523 0.730501 1.41638 0.233217 0.156691

CAGE analysis