Hb_000388_080

Information

Type -
Description -
Location Contig388: 128623-132075
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14390g
description kinase family protein
nr
ID XP_012077782.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067KDS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13423 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38922: 128708-129063 , PASA_asmbl_38923: 129158-131847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_080 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_000076_250 0.0904381277 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000357_070 0.0991747558 - - -
4 Hb_002028_110 0.1078962889 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
5 Hb_000322_030 0.1093134761 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
6 Hb_004994_330 0.1146061641 - - DNA binding protein, putative [Ricinus communis]
7 Hb_001579_300 0.1194735845 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
8 Hb_034579_020 0.120254365 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000099_170 0.1226294565 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
10 Hb_004730_020 0.1244565088 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
11 Hb_001017_130 0.1284797127 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
12 Hb_001433_150 0.1285582673 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006133_020 0.1301145651 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
14 Hb_000390_210 0.1304258883 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_000958_120 0.1305317507 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
16 Hb_005496_020 0.1315943987 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
17 Hb_008511_040 0.1316267088 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_012807_150 0.1325400346 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
19 Hb_000689_050 0.1326078432 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001544_050 0.1328420509 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000388_080 Hb_000388_080 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_001579_300 Hb_001579_300 Hb_000388_080--Hb_001579_300 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_034579_020 Hb_034579_020 Hb_000357_070--Hb_034579_020 Hb_000357_070--Hb_002028_110 Hb_000635_050 Hb_000635_050 Hb_000357_070--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_001433_150 Hb_001433_150 Hb_002028_110--Hb_001433_150 Hb_002028_110--Hb_000689_050 Hb_012807_150 Hb_012807_150 Hb_002028_110--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_002028_110--Hb_007101_260 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000390_210 Hb_000390_210 Hb_000322_030--Hb_000390_210 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000227_400 Hb_000227_400 Hb_000322_030--Hb_000227_400 Hb_001180_010 Hb_001180_010 Hb_004994_330--Hb_001180_010 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_000465_410 Hb_000465_410 Hb_004994_330--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_004994_330--Hb_001544_050 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350 Hb_004730_020 Hb_004730_020 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_006925_050 Hb_006925_050 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7932 6.25233 23.9052 23.0193 0.975547 3.01603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24281 1.62891 2.05469 2.17732 18.3969

CAGE analysis