Hb_000389_040

Information

Type -
Description -
Location Contig389: 129514-132743
Sequence    

Annotation

kegg
ID rcu:RCOM_0092930
description protein binding protein, putative
nr
ID XP_012093269.1
description PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
swissprot
ID Q9LYW0
description BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1
trembl
ID B9T7C6
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0092930 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz domain-containing protein at5g03250-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38951: 128162-131018 , PASA_asmbl_38952: 131046-132660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_040 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
2 Hb_103942_030 0.1462442719 - - protein with unknown function [Ricinus communis]
3 Hb_000995_020 0.1739770442 - - conserved hypothetical protein [Ricinus communis]
4 Hb_133279_010 0.1801438307 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_011861_090 0.1805329997 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
6 Hb_010883_180 0.1848017035 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
7 Hb_102772_010 0.1894663085 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009569_030 0.1909960062 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
9 Hb_001673_090 0.1952293684 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
10 Hb_012090_030 0.1978439614 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
11 Hb_166635_010 0.1995169761 - - ptm1, putative [Ricinus communis]
12 Hb_000413_120 0.2014163402 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
13 Hb_000622_120 0.2028092433 - - hypothetical protein [Hevea brasiliensis]
14 Hb_011671_350 0.2036303871 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
15 Hb_000054_010 0.204600903 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_000462_070 0.2046982196 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
17 Hb_002783_280 0.2061127188 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
18 Hb_000622_230 0.2070077308 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
19 Hb_002193_070 0.2076589397 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_025193_010 0.2106242621 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000389_040 Hb_000389_040 Hb_103942_030 Hb_103942_030 Hb_000389_040--Hb_103942_030 Hb_000995_020 Hb_000995_020 Hb_000389_040--Hb_000995_020 Hb_133279_010 Hb_133279_010 Hb_000389_040--Hb_133279_010 Hb_011861_090 Hb_011861_090 Hb_000389_040--Hb_011861_090 Hb_010883_180 Hb_010883_180 Hb_000389_040--Hb_010883_180 Hb_102772_010 Hb_102772_010 Hb_000389_040--Hb_102772_010 Hb_002893_030 Hb_002893_030 Hb_103942_030--Hb_002893_030 Hb_103942_030--Hb_010883_180 Hb_000260_110 Hb_000260_110 Hb_103942_030--Hb_000260_110 Hb_004007_070 Hb_004007_070 Hb_103942_030--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_103942_030--Hb_000086_090 Hb_000995_020--Hb_102772_010 Hb_000622_230 Hb_000622_230 Hb_000995_020--Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_003371_030 Hb_003371_030 Hb_000995_020--Hb_003371_030 Hb_000617_300 Hb_000617_300 Hb_000995_020--Hb_000617_300 Hb_012090_030 Hb_012090_030 Hb_133279_010--Hb_012090_030 Hb_002498_030 Hb_002498_030 Hb_133279_010--Hb_002498_030 Hb_000574_300 Hb_000574_300 Hb_133279_010--Hb_000574_300 Hb_001105_120 Hb_001105_120 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_000302_320 Hb_000302_320 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_011861_090--Hb_010883_180 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_010883_180--Hb_000260_110 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_010883_180--Hb_000086_090 Hb_102772_010--Hb_000622_120 Hb_000622_190 Hb_000622_190 Hb_102772_010--Hb_000622_190 Hb_102772_010--Hb_000622_230 Hb_000115_200 Hb_000115_200 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0431198 0.311796 1.77798 9.04771 0 0.0188764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122563 0.0385733 1.20441 0.230363 1.30133

CAGE analysis