Hb_000389_060

Information

Type -
Description -
Location Contig389: 155351-160554
Sequence    

Annotation

kegg
ID rcu:RCOM_0185810
description calcium lipid binding protein, putative
nr
ID XP_012093274.1
description PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
swissprot
ID Q7XA06
description Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1
trembl
ID A0A067L7F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20061 PE=4 SV=1
Gene Ontology
ID GO:0005515
description synaptotagmin-3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38956: 155231-155771 , PASA_asmbl_38957: 156073-156400 , PASA_asmbl_38958: 156631-157373 , PASA_asmbl_38959: 157384-160242
cDNA
(Sanger)
(ID:Location)		 043_H06.ab1: 155231-155771 , 044_C16.ab1: 155231-155771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_060 0.0 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
2 Hb_004102_190 0.0803036099 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
3 Hb_001486_260 0.0891894613 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
4 Hb_002875_080 0.1132258032 - - protein with unknown function [Ricinus communis]
5 Hb_001104_120 0.1228396567 - - -
6 Hb_092272_020 0.1236017778 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
7 Hb_000061_480 0.1263184662 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
8 Hb_000703_140 0.1271977332 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
9 Hb_004724_040 0.127719243 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
10 Hb_001019_090 0.1288185517 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
11 Hb_000152_430 0.1292926728 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
12 Hb_000085_200 0.130230872 - - ATP synthase subunit H protein [Hevea brasiliensis]
13 Hb_001366_230 0.1304264724 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000316_110 0.131079348 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
15 Hb_002477_240 0.1315604297 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
16 Hb_011161_040 0.1318762981 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
17 Hb_008016_010 0.1334874936 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
18 Hb_001804_040 0.133699903 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007919_050 0.1346204279 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
20 Hb_001008_060 0.1361740894 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000389_060 Hb_000389_060 Hb_004102_190 Hb_004102_190 Hb_000389_060--Hb_004102_190 Hb_001486_260 Hb_001486_260 Hb_000389_060--Hb_001486_260 Hb_002875_080 Hb_002875_080 Hb_000389_060--Hb_002875_080 Hb_001104_120 Hb_001104_120 Hb_000389_060--Hb_001104_120 Hb_092272_020 Hb_092272_020 Hb_000389_060--Hb_092272_020 Hb_000061_480 Hb_000061_480 Hb_000389_060--Hb_000061_480 Hb_004102_190--Hb_001486_260 Hb_001019_090 Hb_001019_090 Hb_004102_190--Hb_001019_090 Hb_001279_070 Hb_001279_070 Hb_004102_190--Hb_001279_070 Hb_000316_110 Hb_000316_110 Hb_004102_190--Hb_000316_110 Hb_000189_530 Hb_000189_530 Hb_004102_190--Hb_000189_530 Hb_000085_200 Hb_000085_200 Hb_001486_260--Hb_000085_200 Hb_000408_050 Hb_000408_050 Hb_001486_260--Hb_000408_050 Hb_001486_260--Hb_092272_020 Hb_001486_260--Hb_002875_080 Hb_001008_060 Hb_001008_060 Hb_002875_080--Hb_001008_060 Hb_000001_050 Hb_000001_050 Hb_002875_080--Hb_000001_050 Hb_009773_020 Hb_009773_020 Hb_002875_080--Hb_009773_020 Hb_010931_090 Hb_010931_090 Hb_002875_080--Hb_010931_090 Hb_029866_040 Hb_029866_040 Hb_002875_080--Hb_029866_040 Hb_000563_590 Hb_000563_590 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001621_180 Hb_001621_180 Hb_001104_120--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_002660_160 Hb_002660_160 Hb_092272_020--Hb_002660_160 Hb_007747_130 Hb_007747_130 Hb_092272_020--Hb_007747_130 Hb_004410_010 Hb_004410_010 Hb_092272_020--Hb_004410_010 Hb_004724_040 Hb_004724_040 Hb_092272_020--Hb_004724_040 Hb_000190_060 Hb_000190_060 Hb_000061_480--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_000061_480--Hb_009252_130 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_001214_030 Hb_001214_030 Hb_000061_480--Hb_001214_030 Hb_000531_020 Hb_000531_020 Hb_000061_480--Hb_000531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7517 1.02247 2.19377 14.4239 28.4469 26.9109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1975 45.157 23.4796 5.27566 2.83126

CAGE analysis