Hb_000389_080

Information

Type -
Description -
Location Contig389: 180187-182092
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00460g
description POPTRDRAFT_652329; hypothetical protein
nr
ID XP_012093278.1
description PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
swissprot
ID P0C8L4
description Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1
trembl
ID A0A067L7J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20062 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38962: 180202-182126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_080 0.0 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
2 Hb_012539_020 0.0527143256 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
3 Hb_001780_050 0.0761941333 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
4 Hb_000163_130 0.0779904344 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
5 Hb_000905_180 0.0799124271 - - 60S ribosomal protein L31A [Hevea brasiliensis]
6 Hb_001155_040 0.0808209154 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
7 Hb_003053_030 0.0819384439 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
8 Hb_005914_200 0.0825954652 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
9 Hb_000364_030 0.0827628028 - - RNA binding protein, putative [Ricinus communis]
10 Hb_120823_010 0.0831082175 - - -
11 Hb_000181_300 0.0872494341 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
12 Hb_005463_140 0.0884484763 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_000163_210 0.0885754998 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
14 Hb_005663_120 0.0887031291 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
15 Hb_000236_150 0.0897489593 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_001005_080 0.0905434032 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_005474_060 0.0925851645 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
18 Hb_026048_070 0.0930469491 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
19 Hb_002316_120 0.0932711897 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
20 Hb_000300_390 0.0935282576 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]

Gene co-expression network

sample Hb_000389_080 Hb_000389_080 Hb_012539_020 Hb_012539_020 Hb_000389_080--Hb_012539_020 Hb_001780_050 Hb_001780_050 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_005914_200 Hb_004754_070 Hb_004754_070 Hb_001780_050--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_001780_050--Hb_000236_150 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000163_130--Hb_000905_180 Hb_000163_130--Hb_004754_070 Hb_000163_130--Hb_000236_150 Hb_000163_130--Hb_003053_030 Hb_000905_180--Hb_000236_150 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_005463_140 Hb_005463_140 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8814 6.76019 10.9482 22.4163 8.53227 23.8367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.6093 97.8965 49.5203 28.0825 15.7297

CAGE analysis