Hb_000389_100

Information

Type -
Description -
Location Contig389: 293579-297882
Sequence    

Annotation

kegg
ID rcu:RCOM_0262230
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID AAK62030.1
description phenylalanine ammonia-lyase 1 [Manihot esculenta]
swissprot
ID Q42667
description Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1
trembl
ID Q94C45
description Phenylalanine ammonia-lyase OS=Manihot esculenta GN=PAL1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38963: 293673-297820
cDNA
(Sanger)
(ID:Location)		 027_I14.ab1: 293673-296125 , 035_N03.ab1: 293673-296177 , 052_P05.ab1: 293673-296070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_100 0.0 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
2 Hb_008304_050 0.0554868405 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
3 Hb_000561_040 0.0798675718 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
4 Hb_002566_020 0.0859537667 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
5 Hb_009456_010 0.1017416952 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
6 Hb_031224_010 0.1045374237 - - -
7 Hb_002783_180 0.1056982822 - - Tubulin beta-6 chain [Gossypium arboreum]
8 Hb_000659_050 0.1061123206 - - PREDICTED: basic blue protein-like [Jatropha curcas]
9 Hb_049438_020 0.108508379 - - PREDICTED: peroxidase 20 [Jatropha curcas]
10 Hb_003633_170 0.109737283 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002869_090 0.1126830402 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
12 Hb_004893_010 0.1129001701 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
13 Hb_000419_140 0.1143579365 - - Aquaporin PIP2.1, putative [Ricinus communis]
14 Hb_001777_010 0.1201486791 - - -
15 Hb_027400_020 0.1207439352 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
16 Hb_003304_090 0.1212023572 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
17 Hb_000011_320 0.1232043558 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
18 Hb_120357_010 0.1301723036 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_000076_280 0.1301790163 - - PREDICTED: pectinesterase-like [Populus euphratica]
20 Hb_000910_030 0.1304733021 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000389_100 Hb_000389_100 Hb_008304_050 Hb_008304_050 Hb_000389_100--Hb_008304_050 Hb_000561_040 Hb_000561_040 Hb_000389_100--Hb_000561_040 Hb_002566_020 Hb_002566_020 Hb_000389_100--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_000389_100--Hb_009456_010 Hb_031224_010 Hb_031224_010 Hb_000389_100--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_000389_100--Hb_002783_180 Hb_004893_010 Hb_004893_010 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_008304_050--Hb_002566_020 Hb_008304_050--Hb_031224_010 Hb_008304_050--Hb_002783_180 Hb_002869_090 Hb_002869_090 Hb_000561_040--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000561_040--Hb_000659_050 Hb_120357_010 Hb_120357_010 Hb_000561_040--Hb_120357_010 Hb_027400_020 Hb_027400_020 Hb_000561_040--Hb_027400_020 Hb_049438_020 Hb_049438_020 Hb_000561_040--Hb_049438_020 Hb_002566_020--Hb_009456_010 Hb_002566_020--Hb_002783_180 Hb_002566_020--Hb_031224_010 Hb_002566_020--Hb_003633_170 Hb_007370_010 Hb_007370_010 Hb_002566_020--Hb_007370_010 Hb_009456_010--Hb_002783_180 Hb_009456_010--Hb_007370_010 Hb_001777_010 Hb_001777_010 Hb_009456_010--Hb_001777_010 Hb_009456_010--Hb_031224_010 Hb_031224_010--Hb_003633_170 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121023 20.066 53.2666 354.428 0.178271 0.167629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.08456 0.026616 0.101563 137.203 106.004

CAGE analysis