Hb_000390_010

Information

Type -
Description -
Location Contig390: 6231-7004
Sequence    

Annotation

kegg
ID rcu:RCOM_1328320
description hypothetical protein
nr
ID XP_012070262.1
description PREDICTED: protein CDI [Jatropha curcas]
swissprot
ID Q9XIP8
description Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV=1
trembl
ID A0A067KTJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02571 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cdi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39070: 7738-7957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_010 0.0 - - PREDICTED: protein CDI [Jatropha curcas]
2 Hb_012092_040 0.0943771389 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
3 Hb_003464_010 0.0945595484 - - conserved hypothetical protein [Ricinus communis]
4 Hb_089140_070 0.0948912926 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
5 Hb_000035_230 0.1005379705 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
6 Hb_001971_040 0.1043967833 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
7 Hb_001950_090 0.104515268 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
8 Hb_000069_650 0.1109462663 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003847_060 0.1164020403 - - syntaxin, putative [Ricinus communis]
10 Hb_000089_090 0.1178383971 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
11 Hb_000538_290 0.120379417 - - hypothetical protein RCOM_0303940 [Ricinus communis]
12 Hb_001247_060 0.1213812628 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002028_270 0.1231902957 - - Pectinesterase-1 precursor, putative [Ricinus communis]
14 Hb_128392_010 0.1236234276 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
15 Hb_006810_040 0.1237327006 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_005398_050 0.1242149683 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
17 Hb_177195_010 0.1271767046 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
18 Hb_005701_100 0.1289688114 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
19 Hb_000418_040 0.1311771163 - - hypothetical protein RCOM_0377590 [Ricinus communis]
20 Hb_010080_050 0.1312832454 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_010 Hb_000390_010 Hb_012092_040 Hb_012092_040 Hb_000390_010--Hb_012092_040 Hb_003464_010 Hb_003464_010 Hb_000390_010--Hb_003464_010 Hb_089140_070 Hb_089140_070 Hb_000390_010--Hb_089140_070 Hb_000035_230 Hb_000035_230 Hb_000390_010--Hb_000035_230 Hb_001971_040 Hb_001971_040 Hb_000390_010--Hb_001971_040 Hb_001950_090 Hb_001950_090 Hb_000390_010--Hb_001950_090 Hb_000089_090 Hb_000089_090 Hb_012092_040--Hb_000089_090 Hb_001247_060 Hb_001247_060 Hb_012092_040--Hb_001247_060 Hb_012092_040--Hb_089140_070 Hb_012092_040--Hb_000035_230 Hb_012092_040--Hb_003464_010 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_010080_050 Hb_010080_050 Hb_003464_010--Hb_010080_050 Hb_003464_010--Hb_000035_230 Hb_089140_070--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_089140_070--Hb_006810_040 Hb_089140_070--Hb_010080_050 Hb_089140_070--Hb_000035_230 Hb_000035_230--Hb_001247_060 Hb_000035_230--Hb_000089_090 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.299126 5.07738 5.71069 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0705277 0.0554533 0 0.539323 0.221878

CAGE analysis