Hb_000390_020

Information

Type transcription factor
Description TF Family: GRF
Location Contig390: 39353-44732
Sequence    

Annotation

kegg
ID cic:CICLE_v10032065mg
description hypothetical protein
nr
ID XP_012070259.1
description PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
swissprot
ID Q6AWY6
description Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3 PE=3 SV=2
trembl
ID A0A067L625
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02569 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39071: 39152-39416 , PASA_asmbl_39073: 44097-44594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_020 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
2 Hb_000120_350 0.1534159403 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
3 Hb_001414_050 0.1545374207 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
4 Hb_000008_390 0.1570883264 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
5 Hb_000300_710 0.1577484077 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
6 Hb_006935_040 0.1612545821 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
7 Hb_011609_010 0.162135579 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
8 Hb_002151_010 0.1667595037 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
9 Hb_001135_110 0.1672593881 - - -
10 Hb_067197_030 0.1675546681 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
11 Hb_003605_120 0.1764701668 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
12 Hb_000803_090 0.1767892872 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
13 Hb_173029_030 0.1858783056 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003529_180 0.1872345706 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_000732_030 0.187462338 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012787_030 0.1924446752 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
17 Hb_000959_190 0.1955762625 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
18 Hb_001250_040 0.1959079106 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
19 Hb_002999_030 0.1960329085 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
20 Hb_004052_070 0.1960463559 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_020 Hb_000390_020 Hb_000120_350 Hb_000120_350 Hb_000390_020--Hb_000120_350 Hb_001414_050 Hb_001414_050 Hb_000390_020--Hb_001414_050 Hb_000008_390 Hb_000008_390 Hb_000390_020--Hb_000008_390 Hb_000300_710 Hb_000300_710 Hb_000390_020--Hb_000300_710 Hb_006935_040 Hb_006935_040 Hb_000390_020--Hb_006935_040 Hb_011609_010 Hb_011609_010 Hb_000390_020--Hb_011609_010 Hb_000959_190 Hb_000959_190 Hb_000120_350--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_000120_350--Hb_001123_110 Hb_002151_010 Hb_002151_010 Hb_000120_350--Hb_002151_010 Hb_000123_140 Hb_000123_140 Hb_000120_350--Hb_000123_140 Hb_000120_350--Hb_006935_040 Hb_000120_350--Hb_000300_710 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_001414_050--Hb_006935_040 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_000086_180 Hb_000086_180 Hb_000008_390--Hb_000086_180 Hb_000008_390--Hb_011609_010 Hb_000803_090 Hb_000803_090 Hb_000008_390--Hb_000803_090 Hb_000008_390--Hb_006935_040 Hb_000008_390--Hb_000959_190 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_074792_010 Hb_074792_010 Hb_000300_710--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000300_710--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_003430_040 Hb_003430_040 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67901 2.07243 7.94156 3.08724 1.39466 0.864576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435213 0.445029 0.0634849 0.260849 1.83579

CAGE analysis