Hb_000390_030

Information

Type -
Description -
Location Contig390: 46950-48767
Sequence    

Annotation

kegg
ID osa:4336878
description Os04g0600800
nr
ID AFW59344.1
description hypothetical protein ZEAMMB73_364791 [Zea mays]
swissprot
ID -
description -
trembl
ID M1BGS0
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402017405 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39074: 47017-71729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_030 0.0 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
2 Hb_000529_140 0.1171335428 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010288_060 0.1220544412 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
4 Hb_010175_030 0.1266702997 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
5 Hb_008511_140 0.1360710234 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
6 Hb_009252_010 0.1429871939 - - PREDICTED: kinesin light chain [Jatropha curcas]
7 Hb_000495_080 0.1486998704 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
8 Hb_021313_010 0.1544415209 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
9 Hb_000739_210 0.1560484934 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
10 Hb_030959_010 0.1560772548 - - cullin, putative [Ricinus communis]
11 Hb_000381_010 0.1561699429 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
12 Hb_003211_030 0.1589484041 - - -
13 Hb_009674_050 0.1603604039 - - Endosomal P24A protein precursor, putative [Ricinus communis]
14 Hb_000352_220 0.1619330911 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_005511_150 0.163342007 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
16 Hb_000836_060 0.1642741779 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
17 Hb_000056_090 0.1650719638 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
18 Hb_002611_010 0.1655173494 - - amino acid transporter, putative [Ricinus communis]
19 Hb_004339_030 0.1659913667 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
20 Hb_003226_190 0.1663448881 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_030 Hb_000390_030 Hb_000529_140 Hb_000529_140 Hb_000390_030--Hb_000529_140 Hb_010288_060 Hb_010288_060 Hb_000390_030--Hb_010288_060 Hb_010175_030 Hb_010175_030 Hb_000390_030--Hb_010175_030 Hb_008511_140 Hb_008511_140 Hb_000390_030--Hb_008511_140 Hb_009252_010 Hb_009252_010 Hb_000390_030--Hb_009252_010 Hb_000495_080 Hb_000495_080 Hb_000390_030--Hb_000495_080 Hb_000529_140--Hb_008511_140 Hb_005523_010 Hb_005523_010 Hb_000529_140--Hb_005523_010 Hb_010757_030 Hb_010757_030 Hb_000529_140--Hb_010757_030 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_004339_030 Hb_004339_030 Hb_010288_060--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_010288_060--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_010288_060--Hb_000008_350 Hb_000739_210 Hb_000739_210 Hb_010288_060--Hb_000739_210 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290 Hb_005348_110 Hb_005348_110 Hb_010175_030--Hb_005348_110 Hb_000011_220 Hb_000011_220 Hb_010175_030--Hb_000011_220 Hb_009674_050 Hb_009674_050 Hb_010175_030--Hb_009674_050 Hb_010175_030--Hb_009252_010 Hb_177343_010 Hb_177343_010 Hb_010175_030--Hb_177343_010 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_030959_010 Hb_030959_010 Hb_009252_010--Hb_030959_010 Hb_009252_010--Hb_009674_050 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_009252_010--Hb_005348_110 Hb_000352_220 Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_007002_010 Hb_007002_010 Hb_000495_080--Hb_007002_010 Hb_000495_080--Hb_000640_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403737 2.08495 1.70413 6.67702 1.56379 2.57142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64958 1.20985 3.74549 4.73048 14.246

CAGE analysis