Hb_000390_060

Information

Type -
Description -
Location Contig390: 74026-76983
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05890g
description POPTRDRAFT_836071; hypothetical protein
nr
ID XP_012070257.1
description PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
swissprot
ID Q9FKJ0
description F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1
trembl
ID A0A067KTQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02567 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box kelch-repeat protein at5g60570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39076: 73877-76252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_060 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
2 Hb_003434_060 0.0443710319 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
3 Hb_000230_330 0.0552484278 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
4 Hb_000120_500 0.0599704154 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
5 Hb_001584_110 0.0666907332 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
6 Hb_000034_050 0.0680273958 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
7 Hb_000316_030 0.0693584811 - - zinc finger protein, putative [Ricinus communis]
8 Hb_005883_050 0.0701661735 - - PREDICTED: transportin-3 [Jatropha curcas]
9 Hb_000077_050 0.0724106896 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000956_030 0.0736436785 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_000076_080 0.0753441714 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_002097_090 0.0776471341 - - Splicing factor 3A subunit, putative [Ricinus communis]
13 Hb_028639_060 0.0783063474 - - transporter, putative [Ricinus communis]
14 Hb_000943_070 0.0786555244 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
15 Hb_001040_160 0.0800577906 - - glutaredoxin, grx, putative [Ricinus communis]
16 Hb_000703_080 0.080163833 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
17 Hb_000184_130 0.0805200526 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_002200_130 0.0810136641 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
19 Hb_000462_150 0.0812992482 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
20 Hb_001019_170 0.0825456611 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_060 Hb_000390_060 Hb_003434_060 Hb_003434_060 Hb_000390_060--Hb_003434_060 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000316_030 Hb_000316_030 Hb_000390_060--Hb_000316_030 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_003434_060--Hb_000316_030 Hb_000230_330--Hb_001584_110 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_000120_500--Hb_000956_030 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_000120_500--Hb_004198_010 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000462_150 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_001040_160 Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.6471 34.9235 16.0656 33.2637 95.2482 139.798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.4216 45.1355 59.6804 31.0166 21.996

CAGE analysis