Hb_000390_110

Information

Type -
Description -
Location Contig390: 134304-147369
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05810g
description POPTRDRAFT_738553; alpha-hydroxynitrile lyase family protein
nr
ID XP_002325445.1
description alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
swissprot
ID P39450
description S-(hydroxymethyl)glutathione dehydrogenase OS=Photobacterium damsela subsp. piscicida GN=frmA PE=3 SV=1
trembl
ID B9IPW1
description Alpha-hydroxynitrile lyase family protein OS=Populus trichocarpa GN=POPTR_0019s05810g PE=3 SV=1
Gene Ontology
ID GO:0008270
description alpha-hydroxynitrile lyase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39085: 131297-136376 , PASA_asmbl_39086: 134274-136376 , PASA_asmbl_39087: 135205-136303 , PASA_asmbl_39089: 145947-146226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_110 0.0 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
2 Hb_000008_360 0.1405000072 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
3 Hb_002836_120 0.1454069122 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
4 Hb_000575_030 0.157909793 - - unnamed protein product [Vitis vinifera]
5 Hb_000622_240 0.1579647876 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
6 Hb_001435_020 0.1663818319 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
7 Hb_014834_130 0.168088128 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
8 Hb_000174_030 0.1689955617 - - hypothetical protein RCOM_1077370 [Ricinus communis]
9 Hb_004346_030 0.1733967083 - - sucrose phosphate phosphatase, putative [Ricinus communis]
10 Hb_000005_180 0.177164823 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001946_140 0.1798354695 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
12 Hb_001712_020 0.1858895412 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
13 Hb_001056_030 0.1862475047 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
14 Hb_000429_100 0.1893816791 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
15 Hb_001488_030 0.1921976102 - - biotin carboxyl carrier protein [Vernicia fordii]
16 Hb_000638_160 0.1932768334 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
17 Hb_003349_030 0.1937215297 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
18 Hb_001318_260 0.1946701459 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
19 Hb_001014_170 0.1956249138 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
20 Hb_000877_080 0.1969520143 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_110 Hb_000390_110 Hb_000008_360 Hb_000008_360 Hb_000390_110--Hb_000008_360 Hb_002836_120 Hb_002836_120 Hb_000390_110--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000622_240 Hb_000622_240 Hb_000390_110--Hb_000622_240 Hb_001435_020 Hb_001435_020 Hb_000390_110--Hb_001435_020 Hb_014834_130 Hb_014834_130 Hb_000390_110--Hb_014834_130 Hb_000008_360--Hb_002836_120 Hb_001056_030 Hb_001056_030 Hb_000008_360--Hb_001056_030 Hb_140439_010 Hb_140439_010 Hb_000008_360--Hb_140439_010 Hb_000005_180 Hb_000005_180 Hb_000008_360--Hb_000005_180 Hb_010812_100 Hb_010812_100 Hb_000008_360--Hb_010812_100 Hb_002836_120--Hb_000005_180 Hb_001488_030 Hb_001488_030 Hb_002836_120--Hb_001488_030 Hb_001329_090 Hb_001329_090 Hb_002836_120--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_002836_120--Hb_169116_010 Hb_008062_040 Hb_008062_040 Hb_000575_030--Hb_008062_040 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000072_070 Hb_000072_070 Hb_000575_030--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_011316_100 Hb_011316_100 Hb_000575_030--Hb_011316_100 Hb_000107_570 Hb_000107_570 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_005846_030 Hb_005846_030 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_000622_240--Hb_001435_020 Hb_000164_140 Hb_000164_140 Hb_000622_240--Hb_000164_140 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_001435_020--Hb_005846_030 Hb_014834_130--Hb_000638_160 Hb_014834_130--Hb_001712_020 Hb_014834_130--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_014834_130--Hb_011689_120 Hb_001301_340 Hb_001301_340 Hb_014834_130--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_014834_130--Hb_006846_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8848 0.414108 17.4391 7.7859 2.52002 6.45708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7391 16.6011 9.52852 2.3685 22.9944

CAGE analysis