Hb_000390_150

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig390: 172512-174723
Sequence    

Annotation

kegg
ID rcu:RCOM_1327780
description protein with unknown function
nr
ID XP_012070242.1
description PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L614
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02559 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39096: 172856-174728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_150 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
2 Hb_004230_040 0.134352006 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002400_400 0.142947456 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
4 Hb_000016_100 0.1450701232 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
5 Hb_002007_240 0.1470370992 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
6 Hb_000230_520 0.1502074782 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
7 Hb_001472_120 0.1533088026 - - -
8 Hb_000923_050 0.1561799485 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
9 Hb_000237_080 0.158980432 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
10 Hb_000497_180 0.1594190442 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
11 Hb_002435_110 0.1646055091 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
12 Hb_000116_230 0.1647626819 - - -
13 Hb_005214_090 0.1678049317 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
14 Hb_001902_190 0.1690872977 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
15 Hb_000227_060 0.1699578558 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
16 Hb_000329_650 0.1707881955 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
17 Hb_000296_070 0.171085212 - - hypothetical protein B456_003G048700 [Gossypium raimondii]
18 Hb_005306_130 0.1711994973 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_011689_040 0.1714495065 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
20 Hb_002137_020 0.1717641008 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_150 Hb_000390_150 Hb_004230_040 Hb_004230_040 Hb_000390_150--Hb_004230_040 Hb_002400_400 Hb_002400_400 Hb_000390_150--Hb_002400_400 Hb_000016_100 Hb_000016_100 Hb_000390_150--Hb_000016_100 Hb_002007_240 Hb_002007_240 Hb_000390_150--Hb_002007_240 Hb_000230_520 Hb_000230_520 Hb_000390_150--Hb_000230_520 Hb_001472_120 Hb_001472_120 Hb_000390_150--Hb_001472_120 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_004230_040--Hb_002400_400 Hb_011512_090 Hb_011512_090 Hb_002400_400--Hb_011512_090 Hb_002400_400--Hb_002007_240 Hb_000244_220 Hb_000244_220 Hb_002400_400--Hb_000244_220 Hb_005214_090 Hb_005214_090 Hb_002400_400--Hb_005214_090 Hb_000200_280 Hb_000200_280 Hb_002400_400--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_400--Hb_000976_040 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_009701_010 Hb_009701_010 Hb_002007_240--Hb_009701_010 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030 Hb_000206_250 Hb_000206_250 Hb_000230_520--Hb_000206_250 Hb_033152_080 Hb_033152_080 Hb_000230_520--Hb_033152_080 Hb_007101_170 Hb_007101_170 Hb_000230_520--Hb_007101_170 Hb_000483_360 Hb_000483_360 Hb_000230_520--Hb_000483_360 Hb_000413_180 Hb_000413_180 Hb_000230_520--Hb_000413_180 Hb_000230_520--Hb_002007_240 Hb_001279_140 Hb_001279_140 Hb_001472_120--Hb_001279_140 Hb_001472_120--Hb_000483_360 Hb_005539_030 Hb_005539_030 Hb_001472_120--Hb_005539_030 Hb_000003_480 Hb_000003_480 Hb_001472_120--Hb_000003_480 Hb_001936_020 Hb_001936_020 Hb_001472_120--Hb_001936_020 Hb_004577_020 Hb_004577_020 Hb_001472_120--Hb_004577_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.0941 256.876 15.6827 32.2635 143.42 140.781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.489 123.217 138.695 204.281 35.2212

CAGE analysis