Hb_000390_170

Information

Type -
Description -
Location Contig390: 194207-203700
Sequence    

Annotation

kegg
ID tcc:TCM_025546
description Vacuolar ATP synthase subunit H family protein isoform 1
nr
ID XP_012070239.1
description PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
swissprot
ID Q9LX65
description V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=1 SV=1
trembl
ID A0A061F6S3
description Vacuolar ATP synthase subunit H family protein isoform 2 OS=Theobroma cacao GN=TCM_025546 PE=4 SV=1
Gene Ontology
ID GO:0000221
description v-type proton atpase subunit h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39100: 194130-203598 , PASA_asmbl_39102: 201440-201739 , PASA_asmbl_39103: 194466-203607
cDNA
(Sanger)
(ID:Location)		 010_L05.ab1: 194132-198990 , 053_K11.ab1: 194139-198298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_170 0.0 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
2 Hb_008511_130 0.0624410535 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
3 Hb_000141_250 0.0652364502 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
4 Hb_005288_150 0.0717281462 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_003020_010 0.0739091664 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
6 Hb_006817_010 0.0877840919 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
7 Hb_002950_100 0.0895722515 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
8 Hb_002997_080 0.0901839899 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
9 Hb_000094_300 0.0909328141 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
10 Hb_000808_050 0.0911207827 - - exonuclease, putative [Ricinus communis]
11 Hb_000230_560 0.0917550226 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
12 Hb_000175_440 0.0949552686 - - signal peptidase family protein [Populus trichocarpa]
13 Hb_000260_100 0.0955516827 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009646_030 0.0974869335 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000521_320 0.0978469774 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
16 Hb_003813_040 0.0980004133 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
17 Hb_025645_010 0.0984726245 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
18 Hb_000003_600 0.0991508222 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
19 Hb_000390_180 0.1002901574 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
20 Hb_012725_070 0.1009626709 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_170 Hb_000390_170 Hb_008511_130 Hb_008511_130 Hb_000390_170--Hb_008511_130 Hb_000141_250 Hb_000141_250 Hb_000390_170--Hb_000141_250 Hb_005288_150 Hb_005288_150 Hb_000390_170--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_000390_170--Hb_003020_010 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100 Hb_008511_130--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000141_250--Hb_000230_560 Hb_000141_250--Hb_005288_150 Hb_000141_250--Hb_002997_080 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_016461_010 Hb_016461_010 Hb_003020_010--Hb_016461_010 Hb_003020_010--Hb_020367_050 Hb_003020_010--Hb_005288_150 Hb_000390_180 Hb_000390_180 Hb_003020_010--Hb_000390_180 Hb_003020_010--Hb_001329_130 Hb_000866_010 Hb_000866_010 Hb_006817_010--Hb_000866_010 Hb_012725_070 Hb_012725_070 Hb_006817_010--Hb_012725_070 Hb_000808_050 Hb_000808_050 Hb_006817_010--Hb_000808_050 Hb_000690_160 Hb_000690_160 Hb_006817_010--Hb_000690_160 Hb_000053_110 Hb_000053_110 Hb_006817_010--Hb_000053_110 Hb_000521_320 Hb_000521_320 Hb_002950_100--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_002950_100--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_002950_100--Hb_000010_400 Hb_007813_040 Hb_007813_040 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
136.962 47.0347 102.482 60.7537 101.787 74.5946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.446 66.8556 94.0582 48.3166 41.4476

CAGE analysis