Hb_000390_210

Information

Type -
Description -
Location Contig390: 228948-232059
Sequence    

Annotation

kegg
ID rcu:RCOM_1327300
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002520066.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9S247
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1327300 PE=3 SV=1
Gene Ontology
ID GO:0003854
description cinnamoyl- reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39116: 229046-231949 , PASA_asmbl_39117: 230082-230213
cDNA
(Sanger)
(ID:Location)		 043_G07.ab1: 229938-231946

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_210 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_001544_050 0.0747190288 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
3 Hb_000749_260 0.0812610333 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
4 Hb_147378_010 0.0906291318 - - -
5 Hb_143004_020 0.0953586048 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
6 Hb_000061_250 0.0981499877 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
7 Hb_000322_030 0.0991078485 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
8 Hb_001180_010 0.1097106405 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
9 Hb_000958_120 0.1099579131 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
10 Hb_002701_070 0.1108666934 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
11 Hb_008179_030 0.1116184336 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
12 Hb_002272_220 0.1128582549 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003948_020 0.1129021845 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
14 Hb_000108_150 0.1160665088 - - alpha/beta hydrolase, putative [Ricinus communis]
15 Hb_000465_410 0.1174076096 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004994_330 0.119469349 - - DNA binding protein, putative [Ricinus communis]
17 Hb_009838_070 0.1197902816 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
18 Hb_006153_150 0.1250682549 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
19 Hb_000045_050 0.125334779 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
20 Hb_004650_050 0.1263666431 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_210 Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000390_210--Hb_001544_050 Hb_000749_260 Hb_000749_260 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_000465_410 Hb_000465_410 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_000465_410 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_008053_030 Hb_008053_030 Hb_147378_010--Hb_008053_030 Hb_147378_010--Hb_000465_410 Hb_143004_020--Hb_001544_050 Hb_143004_020--Hb_000465_410 Hb_089966_010 Hb_089966_010 Hb_143004_020--Hb_089966_010 Hb_143004_020--Hb_000749_260 Hb_143004_020--Hb_147378_010 Hb_000108_150 Hb_000108_150 Hb_000061_250--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000264_280 Hb_000264_280 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000227_400 Hb_000227_400 Hb_000322_030--Hb_000227_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05644 18.0077 138.341 93.3548 4.76265 5.67029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5905 11.2893 10.5989 8.13684 126.642

CAGE analysis