Hb_000390_230

Information

Type -
Description -
Location Contig390: 247167-255325
Sequence    

Annotation

kegg
ID rcu:RCOM_1327280
description U3 small nucleolar RNA-associated protein, putative (EC:2.7.11.7)
nr
ID XP_012070233.1
description PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
swissprot
ID Q8C4J7
description Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1
trembl
ID B9S245
description U3 small nucleolar RNA-associated protein, putative OS=Ricinus communis GN=RCOM_1327280 PE=4 SV=1
Gene Ontology
ID GO:0005730
description transducin beta-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39121: 247265-248273 , PASA_asmbl_39122: 248537-250162 , PASA_asmbl_39124: 250180-251666 , PASA_asmbl_39125: 251693-252747 , PASA_asmbl_39126: 252887-255183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_230 0.0 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
2 Hb_000836_410 0.0473026771 - - sec10, putative [Ricinus communis]
3 Hb_004994_010 0.051804851 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
4 Hb_000115_280 0.0607048345 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
5 Hb_000567_070 0.0612218945 - - autophagy protein, putative [Ricinus communis]
6 Hb_000563_130 0.0664522931 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
7 Hb_138435_010 0.0667705446 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
8 Hb_008059_010 0.0671706035 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
9 Hb_001153_210 0.0671942734 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
10 Hb_003186_020 0.0684881522 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
11 Hb_005867_070 0.0713874934 - - DNA binding protein, putative [Ricinus communis]
12 Hb_031284_010 0.0723882032 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
13 Hb_001226_150 0.0727699221 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
14 Hb_002067_030 0.0731373168 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
15 Hb_000935_010 0.073249633 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
16 Hb_000339_040 0.0740308016 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_001430_080 0.0743913409 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
18 Hb_002055_020 0.0751601533 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
19 Hb_000457_230 0.0756961302 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
20 Hb_003861_050 0.0763147092 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_230 Hb_000390_230 Hb_000836_410 Hb_000836_410 Hb_000390_230--Hb_000836_410 Hb_004994_010 Hb_004994_010 Hb_000390_230--Hb_004994_010 Hb_000115_280 Hb_000115_280 Hb_000390_230--Hb_000115_280 Hb_000567_070 Hb_000567_070 Hb_000390_230--Hb_000567_070 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_031284_010 Hb_031284_010 Hb_000115_280--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_000115_280--Hb_003186_020 Hb_008059_010 Hb_008059_010 Hb_000115_280--Hb_008059_010 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000254_100 Hb_000254_100 Hb_000567_070--Hb_000254_100 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000567_070--Hb_000115_280 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000563_130--Hb_000836_410 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_032202_080 Hb_032202_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00814 5.08949 7.11937 3.12675 5.10597 4.86833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64775 3.86776 3.13573 4.95971 4.87569

CAGE analysis