Hb_000390_300

Information

Type transcription factor
Description TF Family: GNAT
Location Contig390: 295420-301550
Sequence    

Annotation

kegg
ID rcu:RCOM_1326990
description N-acetyltransferase, putative
nr
ID XP_012070229.1
description PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
swissprot
ID Q9M8T9
description Histone acetyltransferase MCC1 OS=Arabidopsis thaliana GN=MCC1 PE=2 SV=1
trembl
ID A0A067KWZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02543 PE=4 SV=1
Gene Ontology
ID GO:0016746
description histone acetyltransferase mcc1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39130: 295122-301217 , PASA_asmbl_39131: 298295-298762 , PASA_asmbl_39133: 299842-300165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_300 0.0 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
2 Hb_008494_100 0.0550700995 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
3 Hb_006693_020 0.055091305 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
4 Hb_024439_010 0.0554764114 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
5 Hb_006615_240 0.0585286323 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
6 Hb_007676_080 0.0628350872 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
7 Hb_006573_190 0.0629783316 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_001278_100 0.063171188 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
9 Hb_003582_060 0.0641782362 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
10 Hb_000431_170 0.0665955978 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_000566_120 0.0672848497 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
12 Hb_000003_230 0.0684546835 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
13 Hb_001931_010 0.06858203 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_154948_040 0.0695991724 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
15 Hb_017895_040 0.0710001406 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
16 Hb_000045_310 0.0736460798 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
17 Hb_001341_150 0.0737806854 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
18 Hb_002171_060 0.0744684824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000136_260 0.0752182555 - - 40S ribosomal protein S5A [Hevea brasiliensis]
20 Hb_000805_240 0.0752886045 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000390_300 Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_008494_100--Hb_007676_080 Hb_008847_030 Hb_008847_030 Hb_008494_100--Hb_008847_030 Hb_004586_420 Hb_004586_420 Hb_008494_100--Hb_004586_420 Hb_000003_230 Hb_000003_230 Hb_008494_100--Hb_000003_230 Hb_000340_180 Hb_000340_180 Hb_008494_100--Hb_000340_180 Hb_000431_170 Hb_000431_170 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_004108_070 Hb_004108_070 Hb_006693_020--Hb_004108_070 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390 Hb_000317_390 Hb_000317_390 Hb_006693_020--Hb_000317_390 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_004696_080 Hb_004696_080 Hb_024439_010--Hb_004696_080 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_007676_080--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_007676_080--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_006573_190--Hb_000003_230 Hb_006573_190--Hb_004586_420 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76225 6.9838 10.1286 15.0775 9.67963 8.90741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2219 23.0751 12.6872 10.2676 9.00201

CAGE analysis