Hb_000391_030

Information

Type -
Description -
Location Contig391: 87435-91845
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000391_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_000050_230 3.32999e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002285_010 4.34531e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004332_060 0.0005236675 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007313_020 0.0007579052 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000036_020 0.0013700861 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002985_020 0.0013997904 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_006124_020 0.001885751 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
9 Hb_001568_100 0.0031697283 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_008052_010 0.0033258314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001740_010 0.0043598956 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
12 Hb_001621_080 0.0048635089 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_013405_120 0.0052169302 - - -
14 Hb_003894_130 0.0056184427 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_002400_120 0.0062448902 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_002553_150 0.0063688152 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
17 Hb_001611_030 0.0065441285 - - -
18 Hb_000496_040 0.0068295566 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027556_030 0.0070798137 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
20 Hb_074336_010 0.0078870864 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000391_030 Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_000391_030--Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_000391_030--Hb_002285_010 Hb_004332_060 Hb_004332_060 Hb_000391_030--Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_000391_030--Hb_007313_020 Hb_000036_020 Hb_000036_020 Hb_000391_030--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_000391_030--Hb_002985_020 Hb_000050_230--Hb_002285_010 Hb_000050_230--Hb_004332_060 Hb_000050_230--Hb_007313_020 Hb_000050_230--Hb_000036_020 Hb_000050_230--Hb_002985_020 Hb_002285_010--Hb_004332_060 Hb_002285_010--Hb_007313_020 Hb_002285_010--Hb_000036_020 Hb_002285_010--Hb_002985_020 Hb_004332_060--Hb_007313_020 Hb_004332_060--Hb_000036_020 Hb_004332_060--Hb_002985_020 Hb_007313_020--Hb_000036_020 Hb_007313_020--Hb_002985_020 Hb_000036_020--Hb_002985_020 Hb_006124_020 Hb_006124_020 Hb_000036_020--Hb_006124_020 Hb_002985_020--Hb_006124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00402651 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.003459 0

CAGE analysis