Hb_000392_050

Information

Type -
Description -
Location Contig392: 35656-40135
Sequence    

Annotation

kegg
ID rcu:RCOM_1472160
description membrane associated ring finger 1,8, putative
nr
ID XP_012080272.1
description PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11630 PE=4 SV=1
Gene Ontology
ID GO:0008270
description membrane associated ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39236: 34724-40155 , PASA_asmbl_39237: 37748-38147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_050 0.0 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
2 Hb_000785_030 0.0529712638 - - hypothetical protein RCOM_0808030 [Ricinus communis]
3 Hb_009222_010 0.0778028739 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_018790_070 0.08452757 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
5 Hb_001102_080 0.0852617055 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
6 Hb_002942_050 0.0856637211 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
7 Hb_001142_050 0.0869423563 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
8 Hb_004450_060 0.0884784631 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
9 Hb_000959_270 0.0902229152 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
10 Hb_001105_010 0.0909211013 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
11 Hb_178968_100 0.0922955434 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
12 Hb_011848_010 0.0925204041 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
13 Hb_000617_220 0.0932608546 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_000480_010 0.0934606523 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006623_020 0.0937105075 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
16 Hb_001894_030 0.0939598067 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
17 Hb_000261_250 0.0940224705 - - elongation factor 1-alpha [Lepidium sativum]
18 Hb_000808_250 0.0962302066 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
19 Hb_001910_020 0.096562715 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
20 Hb_152453_010 0.0977991083 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000392_050 Hb_000392_050 Hb_000785_030 Hb_000785_030 Hb_000392_050--Hb_000785_030 Hb_009222_010 Hb_009222_010 Hb_000392_050--Hb_009222_010 Hb_018790_070 Hb_018790_070 Hb_000392_050--Hb_018790_070 Hb_001102_080 Hb_001102_080 Hb_000392_050--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000059_140 Hb_000059_140 Hb_000785_030--Hb_000059_140 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010 Hb_018790_070--Hb_001102_080 Hb_018790_070--Hb_002942_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_000012_020 Hb_000012_020 Hb_001142_050--Hb_000012_020 Hb_000976_260 Hb_000976_260 Hb_001142_050--Hb_000976_260 Hb_001142_050--Hb_011848_010 Hb_000261_250 Hb_000261_250 Hb_001142_050--Hb_000261_250 Hb_001142_050--Hb_009222_010 Hb_001142_050--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5182 11.2902 19.4329 12.9434 26.3874 27.2096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2498 15.8842 6.86937 11.0475 5.13763

CAGE analysis