Hb_000392_070

Information

Type -
Description -
Location Contig392: 43953-47105
Sequence    

Annotation

kegg
ID rcu:RCOM_1472280
description catalytic, putative
nr
ID XP_002514760.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID B9RLZ1
description Catalytic, putative OS=Ricinus communis GN=RCOM_1472280 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39239: 46138-46353 , PASA_asmbl_39240: 46383-46757 , PASA_asmbl_39241: 46979-47409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_070 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_004218_150 0.0733901192 - - electron transporter, putative [Ricinus communis]
3 Hb_006400_040 0.1020097145 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
4 Hb_000204_040 0.103272295 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
5 Hb_005306_110 0.1049732135 - - casein kinase, putative [Ricinus communis]
6 Hb_008725_250 0.1066586877 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000943_070 0.108991159 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
8 Hb_004324_280 0.1090304548 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
9 Hb_002477_160 0.109683382 - - hypothetical protein L484_013453 [Morus notabilis]
10 Hb_000798_060 0.110431539 transcription factor TF Family: PHD -
11 Hb_000359_170 0.1114740867 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
12 Hb_002119_060 0.1120816869 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
13 Hb_007908_020 0.1163258472 - - zinc finger family protein [Populus trichocarpa]
14 Hb_003609_040 0.1164397374 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
15 Hb_000625_020 0.1165962968 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002215_050 0.1170945144 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_000920_040 0.11716795 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
18 Hb_000836_360 0.11846845 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
19 Hb_002027_260 0.1185243314 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
20 Hb_004055_010 0.1204534257 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_070 Hb_000392_070 Hb_004218_150 Hb_004218_150 Hb_000392_070--Hb_004218_150 Hb_006400_040 Hb_006400_040 Hb_000392_070--Hb_006400_040 Hb_000204_040 Hb_000204_040 Hb_000392_070--Hb_000204_040 Hb_005306_110 Hb_005306_110 Hb_000392_070--Hb_005306_110 Hb_008725_250 Hb_008725_250 Hb_000392_070--Hb_008725_250 Hb_000943_070 Hb_000943_070 Hb_000392_070--Hb_000943_070 Hb_004218_150--Hb_006400_040 Hb_116349_160 Hb_116349_160 Hb_004218_150--Hb_116349_160 Hb_002027_260 Hb_002027_260 Hb_004218_150--Hb_002027_260 Hb_004218_150--Hb_005306_110 Hb_000139_410 Hb_000139_410 Hb_004218_150--Hb_000139_410 Hb_006400_040--Hb_002027_260 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_006400_040--Hb_001623_420 Hb_006400_040--Hb_005306_110 Hb_012634_010 Hb_012634_010 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_005306_110--Hb_001584_330 Hb_005306_110--Hb_001623_420 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_003609_040 Hb_003609_040 Hb_000943_070--Hb_003609_040 Hb_000943_070--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000943_070--Hb_001214_130 Hb_003406_010 Hb_003406_010 Hb_000943_070--Hb_003406_010 Hb_000645_050 Hb_000645_050 Hb_000943_070--Hb_000645_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0597 11.6123 2.16239 10.5638 22.0881 21.3791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7335 11.2947 16.7101 3.78573 3.68482

CAGE analysis