Hb_000392_150

Information

Type -
Description -
Location Contig392: 140605-146203
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24080g
description POPTRDRAFT_770844; hypothetical protein
nr
ID XP_012080261.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
swissprot
ID Q9CA58
description Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
trembl
ID A0A067KHG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11620 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g74580

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39246: 145184-145353 , PASA_asmbl_39247: 146605-146806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_150 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
2 Hb_000866_120 0.0796271111 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
3 Hb_000976_210 0.0873808187 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
4 Hb_002798_070 0.0891634177 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
5 Hb_002007_160 0.0901358936 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
6 Hb_000330_040 0.0909537003 - - PREDICTED: protein RER1B-like [Jatropha curcas]
7 Hb_029142_050 0.0919172695 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_003082_010 0.0941724688 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
9 Hb_001366_310 0.0942216261 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
10 Hb_000172_110 0.0971682778 - - -
11 Hb_000140_230 0.0972205675 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
12 Hb_012490_090 0.0975880485 - - PREDICTED: myosin-17 [Jatropha curcas]
13 Hb_002316_150 0.0976869937 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
14 Hb_000442_010 0.0988921779 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
15 Hb_008775_040 0.1011989649 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
16 Hb_000264_320 0.1015348373 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
17 Hb_002043_140 0.104240458 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
18 Hb_000243_250 0.1045862571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
19 Hb_002636_100 0.104695806 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
20 Hb_143766_060 0.1049933261 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_150 Hb_000392_150 Hb_000866_120 Hb_000866_120 Hb_000392_150--Hb_000866_120 Hb_000976_210 Hb_000976_210 Hb_000392_150--Hb_000976_210 Hb_002798_070 Hb_002798_070 Hb_000392_150--Hb_002798_070 Hb_002007_160 Hb_002007_160 Hb_000392_150--Hb_002007_160 Hb_000330_040 Hb_000330_040 Hb_000392_150--Hb_000330_040 Hb_029142_050 Hb_029142_050 Hb_000392_150--Hb_029142_050 Hb_000866_120--Hb_002007_160 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_002043_140 Hb_002043_140 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002007_160--Hb_002798_070 Hb_001019_180 Hb_001019_180 Hb_000330_040--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_000330_040--Hb_073562_010 Hb_000330_040--Hb_000976_210 Hb_008775_040 Hb_008775_040 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_029142_050--Hb_000866_120 Hb_000046_580 Hb_000046_580 Hb_029142_050--Hb_000046_580 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04763 2.36552 0.796687 0.781803 1.344 0.726461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677918 0.995803 2.03972 1.14281 0.935235

CAGE analysis