Hb_000392_170

Information

Type -
Description -
Location Contig392: 153834-155264
Sequence    

Annotation

kegg
ID rcu:RCOM_1514990
description Phytochrome kinase substrate, putative
nr
ID XP_012080254.1
description PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
swissprot
ID Q9SWI1
description Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2
trembl
ID B9R994
description Phytochrome kinase substrate, putative OS=Ricinus communis GN=RCOM_1514990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39250: 153757-154043 , PASA_asmbl_39251: 154083-155338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_170 0.0 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
2 Hb_004316_020 0.0962152882 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
3 Hb_002311_500 0.1004899636 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
4 Hb_002200_020 0.1023461408 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
5 Hb_004223_080 0.1060682748 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000856_230 0.106832111 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
7 Hb_000200_270 0.107055343 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_000059_030 0.1167909717 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
9 Hb_015037_010 0.123878319 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
10 Hb_009421_090 0.1239843381 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
11 Hb_000809_130 0.1239874723 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
12 Hb_001025_140 0.1282217848 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
13 Hb_006873_010 0.1302004457 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_024714_090 0.1302105316 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
15 Hb_004712_090 0.1307072012 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
16 Hb_003248_030 0.1307289978 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_003502_040 0.1323441418 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
18 Hb_000395_120 0.1324169201 - - Stellacyanin, putative [Ricinus communis]
19 Hb_001571_080 0.1332689586 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
20 Hb_000438_200 0.134876468 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_170 Hb_000392_170 Hb_004316_020 Hb_004316_020 Hb_000392_170--Hb_004316_020 Hb_002311_500 Hb_002311_500 Hb_000392_170--Hb_002311_500 Hb_002200_020 Hb_002200_020 Hb_000392_170--Hb_002200_020 Hb_004223_080 Hb_004223_080 Hb_000392_170--Hb_004223_080 Hb_000856_230 Hb_000856_230 Hb_000392_170--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_000392_170--Hb_000200_270 Hb_006873_010 Hb_006873_010 Hb_004316_020--Hb_006873_010 Hb_003502_040 Hb_003502_040 Hb_004316_020--Hb_003502_040 Hb_003248_030 Hb_003248_030 Hb_004316_020--Hb_003248_030 Hb_003207_210 Hb_003207_210 Hb_004316_020--Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_004316_020--Hb_164337_010 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002311_500--Hb_002200_020 Hb_002311_500--Hb_000200_270 Hb_002200_020--Hb_000200_270 Hb_015037_010 Hb_015037_010 Hb_002200_020--Hb_015037_010 Hb_002200_020--Hb_000856_230 Hb_002540_100 Hb_002540_100 Hb_002200_020--Hb_002540_100 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_001025_140 Hb_001025_140 Hb_004223_080--Hb_001025_140 Hb_000349_250 Hb_000349_250 Hb_004223_080--Hb_000349_250 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_009421_090 Hb_009421_090 Hb_000856_230--Hb_009421_090 Hb_014700_020 Hb_014700_020 Hb_000856_230--Hb_014700_020 Hb_000856_230--Hb_000200_270 Hb_000856_230--Hb_002540_100 Hb_000856_230--Hb_004316_020 Hb_000371_030 Hb_000371_030 Hb_000856_230--Hb_000371_030 Hb_010267_020 Hb_010267_020 Hb_000200_270--Hb_010267_020 Hb_002918_220 Hb_002918_220 Hb_000200_270--Hb_002918_220 Hb_005695_070 Hb_005695_070 Hb_000200_270--Hb_005695_070 Hb_000200_270--Hb_009421_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0160535 0.989263 3.47484 1.58657 0.015038 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366263 0 0 0.12677 0.419308

CAGE analysis