Hb_000392_230

Information

Type -
Description -
Location Contig392: 208836-214768
Sequence    

Annotation

kegg
ID rcu:RCOM_1514820
description hypothetical protein
nr
ID XP_002511562.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R987
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1514820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39255: 207326-207840 , PASA_asmbl_39256: 208880-214891
cDNA
(Sanger)
(ID:Location)		 027_N22.ab1: 208880-211268 , 052_A03.ab1: 208880-211258

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010315_060 0.0547116552 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
3 Hb_000649_230 0.0595752838 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
4 Hb_000751_030 0.061386446 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
5 Hb_022132_050 0.0658480003 - - GTP binding protein, putative [Ricinus communis]
6 Hb_001195_260 0.0686257384 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
7 Hb_073973_130 0.0743146446 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
8 Hb_058972_010 0.0756087507 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
9 Hb_011618_050 0.0756587987 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
10 Hb_001501_080 0.0789878855 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
11 Hb_004122_040 0.0794732612 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
12 Hb_000414_050 0.0805051719 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
13 Hb_000776_100 0.0814717691 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
14 Hb_005288_150 0.0828687503 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
15 Hb_002783_170 0.0841286333 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
16 Hb_000260_100 0.0857469941 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007416_300 0.086919299 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
18 Hb_006588_070 0.0872812785 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
19 Hb_027428_010 0.0884281981 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
20 Hb_001186_090 0.0904627913 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_230 Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000392_230--Hb_010315_060 Hb_000649_230 Hb_000649_230 Hb_000392_230--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_000392_230--Hb_000751_030 Hb_022132_050 Hb_022132_050 Hb_000392_230--Hb_022132_050 Hb_001195_260 Hb_001195_260 Hb_000392_230--Hb_001195_260 Hb_073973_130 Hb_073973_130 Hb_000392_230--Hb_073973_130 Hb_010315_060--Hb_001195_260 Hb_010315_060--Hb_000649_230 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_004122_040 Hb_004122_040 Hb_010315_060--Hb_004122_040 Hb_010315_060--Hb_022132_050 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_000649_230--Hb_073973_130 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_001501_080 Hb_001501_080 Hb_000751_030--Hb_001501_080 Hb_007007_040 Hb_007007_040 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_022132_050--Hb_027428_010 Hb_001195_260--Hb_058972_010 Hb_001195_260--Hb_004122_040 Hb_000610_010 Hb_000610_010 Hb_001195_260--Hb_000610_010 Hb_001195_260--Hb_000751_030 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_027428_010 Hb_073973_130--Hb_002872_030 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_073973_130--Hb_000610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5466 16.7858 46.7442 30.4886 35.2626 31.229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7883 29.9884 16.1657 16.6011 14.865

CAGE analysis