Hb_000392_270

Information

Type -
Description -
Location Contig392: 234898-248526
Sequence    

Annotation

kegg
ID rcu:RCOM_1514770
description 40S ribosomal protein S9, putative
nr
ID XP_012080241.1
description PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
swissprot
ID Q9FLF0
description 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1
trembl
ID A0A067K8C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39265: 234891-237543 , PASA_asmbl_39266: 245950-248579 , PASA_asmbl_39267: 245950-248440
cDNA
(Sanger)
(ID:Location)		 001_L18.ab1: 245950-248357 , 001_N18.ab1: 245950-248347 , 002_H24.ab1: 245958-248369 , 008_E19.ab1: 234891-237196 , 008_P02.ab1: 234894-237225 , 012_M07.ab1: 234891-237327 , 018_H22.ab1: 245952-248290 , 020_P14.ab1: 234891-237274 , 024_D19.ab1: 245955-248227 , 027_C11.ab1: 245955-248284 , 029_A09.ab1: 245952-248173 , 030_N02.ab1: 245950-248298 , 031_J20.ab1: 245955-248348 , 032_J16.ab1: 245952-248290 , 037_H05.ab1: 234870-237200 , 037_N11.ab1: 245958-248290 , 038_A23.ab1: 234894-237241 , 038_H03.ab1: 245950-248290 , 039_J09.ab1: 245950-248275 , 040_H18.ab1: 234891-237348 , 044_F12.ab1: 245955-248376

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_270 0.0 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
2 Hb_000977_080 0.0594319176 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_001369_650 0.0635900919 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
4 Hb_003540_040 0.0637444708 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
5 Hb_003551_020 0.0648369178 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
6 Hb_003878_190 0.064968586 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
7 Hb_011360_140 0.070913732 - - 40S ribosomal protein S19, putative [Ricinus communis]
8 Hb_001951_110 0.0711222192 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
9 Hb_026198_050 0.0711374501 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
10 Hb_010449_020 0.071315042 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
11 Hb_000045_130 0.0723793974 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
12 Hb_001828_090 0.073487004 - - prohibitin, putative [Ricinus communis]
13 Hb_002762_060 0.0759822435 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_022250_040 0.0765054375 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
15 Hb_024835_030 0.0765490099 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
16 Hb_000866_300 0.0788371145 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
17 Hb_000015_080 0.0788724053 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
18 Hb_009711_030 0.0799704871 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
19 Hb_003001_060 0.0800529431 - - wound-responsive family protein [Populus trichocarpa]
20 Hb_002603_100 0.0803463263 - - ATATH9, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_270 Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_001369_650--Hb_000045_130 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_125000_010 Hb_125000_010 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_003540_040--Hb_002097_110 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000045_130 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080 Hb_003878_190--Hb_003001_060 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_003878_190--Hb_009711_030 Hb_003878_190--Hb_000977_080 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
305.612 102.602 85.2206 60.8691 307.53 283.258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
352.057 389.872 201.413 81.2617 43.2469

CAGE analysis