Hb_000392_290

Information

Type transcription factor
Description TF Family: bHLH
Location Contig392: 252646-253265
Sequence    

Annotation

kegg
ID rcu:RCOM_1514750
description DNA binding protein, putative
nr
ID XP_002511555.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q6YUX0
description Transcription factor ILI5 OS=Oryza sativa subsp. japonica GN=ILI5 PE=1 SV=1
trembl
ID B9R980
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1514750 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh135

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39269: 252530-252726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_290 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_001789_170 0.0435562335 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
3 Hb_139691_010 0.0495613391 - - -
4 Hb_008035_050 0.0594196746 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
5 Hb_003659_020 0.0644994297 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_002498_130 0.0778930007 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
7 Hb_000781_050 0.0847846454 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_011356_020 0.1035054624 - - -
9 Hb_024247_020 0.1721268542 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
10 Hb_000856_160 0.2144108595 - - -
11 Hb_000264_220 0.2429896509 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
12 Hb_001143_260 0.2855241711 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
13 Hb_001342_050 0.2871617197 - - -
14 Hb_000011_090 0.3014703025 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
15 Hb_152362_010 0.3073053008 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
16 Hb_043623_020 0.3297629429 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
17 Hb_001221_280 0.3298998018 - - -
18 Hb_001008_140 0.3418227819 - - -
19 Hb_000184_200 0.3419870519 - - -
20 Hb_002999_040 0.3436031293 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000392_290 Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000392_290--Hb_001789_170 Hb_139691_010 Hb_139691_010 Hb_000392_290--Hb_139691_010 Hb_008035_050 Hb_008035_050 Hb_000392_290--Hb_008035_050 Hb_003659_020 Hb_003659_020 Hb_000392_290--Hb_003659_020 Hb_002498_130 Hb_002498_130 Hb_000392_290--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_000392_290--Hb_000781_050 Hb_001789_170--Hb_002498_130 Hb_001789_170--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001789_170--Hb_011356_020 Hb_001789_170--Hb_139691_010 Hb_001789_170--Hb_008035_050 Hb_139691_010--Hb_008035_050 Hb_139691_010--Hb_003659_020 Hb_139691_010--Hb_002498_130 Hb_139691_010--Hb_000781_050 Hb_008035_050--Hb_003659_020 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050 Hb_003659_020--Hb_001789_170 Hb_003659_020--Hb_002498_130 Hb_003659_020--Hb_000781_050 Hb_002498_130--Hb_000781_050 Hb_002498_130--Hb_011356_020 Hb_024247_020 Hb_024247_020 Hb_002498_130--Hb_024247_020 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_024247_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.179506 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.512442 0 0

CAGE analysis