Hb_000392_340

Information

Type -
Description -
Location Contig392: 291069-294082
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34360g
description calcineurin-like phosphoesterase family protein
nr
ID XP_012080235.1
description PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
swissprot
ID Q9STT2
description Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1
trembl
ID A0A067K8B8
description Vacuolar protein sorting-associated protein 29 OS=Jatropha curcas GN=JCGZ_11604 PE=3 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39275: 291332-291596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_340 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
2 Hb_005054_080 0.0619272204 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
3 Hb_002681_200 0.0822840121 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
4 Hb_001951_130 0.0825746692 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
5 Hb_000127_140 0.0923589069 - - transporter-related family protein [Populus trichocarpa]
6 Hb_180343_010 0.0935985752 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
7 Hb_000832_190 0.0965420449 - - Rab3 [Hevea brasiliensis]
8 Hb_000849_130 0.0966673955 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
9 Hb_008147_090 0.0998778444 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010368_050 0.0998803403 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
11 Hb_004032_030 0.1006090077 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
12 Hb_001511_260 0.1010905675 - - tryptophan biosynthesis protein, putative [Ricinus communis]
13 Hb_000608_050 0.1023888172 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
14 Hb_000365_270 0.1053155551 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
15 Hb_005765_050 0.1070585067 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
16 Hb_006326_040 0.1073238355 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002042_150 0.1073539383 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_004994_210 0.1077301642 - - phosphomannomutase family protein [Populus trichocarpa]
19 Hb_001195_060 0.1083956155 - - Protein yrdA, putative [Ricinus communis]
20 Hb_000062_330 0.1086323995 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_000392_340 Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_004032_030 Hb_004032_030 Hb_005054_080--Hb_004032_030 Hb_002298_030 Hb_002298_030 Hb_005054_080--Hb_002298_030 Hb_005695_120 Hb_005695_120 Hb_005054_080--Hb_005695_120 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_002681_200--Hb_000608_050 Hb_148121_040 Hb_148121_040 Hb_002681_200--Hb_148121_040 Hb_002681_200--Hb_005765_050 Hb_002863_030 Hb_002863_030 Hb_002681_200--Hb_002863_030 Hb_005054_210 Hb_005054_210 Hb_002681_200--Hb_005054_210 Hb_001951_130--Hb_000127_140 Hb_010368_050 Hb_010368_050 Hb_001951_130--Hb_010368_050 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_000127_140--Hb_008147_090 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_180343_010--Hb_002184_090 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.65913 4.47376 17.8216 25.3953 4.41362 8.256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8865 17.2666 12.8874 10.7891 7.34076

CAGE analysis