Hb_000392_380

Information

Type -
Description -
Location Contig392: 313008-318951
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05540g
description POPTRDRAFT_836064; Ubiquitin-conjugating enzyme E2-17 kDa family protein
nr
ID KEH19791.1
description ubiquitin-conjugating enzyme [Medicago truncatula]
swissprot
ID P42745
description Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1
trembl
ID A0A072TRF9
description Ubiquitin-conjugating enzyme OS=Medicago truncatula GN=MTR_8g468530 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39283: 316337-317163 , PASA_asmbl_39284: 313034-318971 , PASA_asmbl_39286: 314994-315504 , PASA_asmbl_39287: 315684-316074 , PASA_asmbl_39288: 313052-314932
cDNA
(Sanger)
(ID:Location)		 021_N11.ab1: 313248-318971 , 027_N06.ab1: 313337-318971 , 047_E24.ab1: 313179-318901

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_380 0.0 - - ubiquitin-conjugating enzyme [Medicago truncatula]
2 Hb_114310_080 0.0858276728 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000115_230 0.0884088604 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_000019_070 0.1039189887 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
5 Hb_001172_120 0.1058017382 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
6 Hb_029388_030 0.106641195 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
7 Hb_007192_100 0.107366376 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
8 Hb_002374_390 0.1105882151 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
9 Hb_000239_030 0.1112574034 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
10 Hb_000483_390 0.1117502737 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
11 Hb_009486_020 0.1125757803 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
12 Hb_005496_010 0.1144216895 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
13 Hb_006569_100 0.1149609081 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
14 Hb_028515_010 0.1152962213 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
15 Hb_001157_010 0.1159123499 - - deoxyhypusine synthase, putative [Ricinus communis]
16 Hb_001314_040 0.1162097391 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
17 Hb_020419_020 0.1173852157 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_001481_140 0.1176862549 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
19 Hb_008772_010 0.1186145993 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005568_120 0.120359756 - - Prephenate dehydratase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000392_380 Hb_000392_380 Hb_114310_080 Hb_114310_080 Hb_000392_380--Hb_114310_080 Hb_000115_230 Hb_000115_230 Hb_000392_380--Hb_000115_230 Hb_000019_070 Hb_000019_070 Hb_000392_380--Hb_000019_070 Hb_001172_120 Hb_001172_120 Hb_000392_380--Hb_001172_120 Hb_029388_030 Hb_029388_030 Hb_000392_380--Hb_029388_030 Hb_007192_100 Hb_007192_100 Hb_000392_380--Hb_007192_100 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_015807_100 Hb_015807_100 Hb_000115_230--Hb_015807_100 Hb_000115_230--Hb_001172_120 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_003207_170 Hb_003207_170 Hb_000019_070--Hb_003207_170 Hb_000019_070--Hb_114310_080 Hb_000019_070--Hb_000483_390 Hb_011377_050 Hb_011377_050 Hb_000019_070--Hb_011377_050 Hb_003671_020 Hb_003671_020 Hb_000019_070--Hb_003671_020 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_029388_030--Hb_003671_020 Hb_029388_030--Hb_000985_060 Hb_033594_150 Hb_033594_150 Hb_029388_030--Hb_033594_150 Hb_000479_190 Hb_000479_190 Hb_029388_030--Hb_000479_190 Hb_152784_010 Hb_152784_010 Hb_029388_030--Hb_152784_010 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_007192_100--Hb_015807_100 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4923 44.3052 38.3052 83.3566 38.3976 53.404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.75 205.799 173.788 42.2455 22.9292

CAGE analysis