Hb_000392_440

Information

Type -
Description -
Location Contig392: 358477-362444
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07570g
description hypothetical protein
nr
ID XP_012080217.1
description PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
swissprot
ID Q8LGU7
description Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3
trembl
ID A0A067K4U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11592 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear ribonuclease z

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39291: 359529-360346 , PASA_asmbl_39292: 361282-362336 , PASA_asmbl_39293: 361655-362336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_440 0.0 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
2 Hb_011360_140 0.060978694 - - 40S ribosomal protein S19, putative [Ricinus communis]
3 Hb_005993_040 0.0639489211 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
4 Hb_010661_030 0.070582268 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
5 Hb_002928_130 0.0724840981 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
6 Hb_000015_080 0.0747787511 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
7 Hb_011571_020 0.0750614121 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
8 Hb_000046_280 0.0756454233 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
9 Hb_001404_100 0.0782036604 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
10 Hb_000665_240 0.0784741166 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_007576_040 0.079241453 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
12 Hb_118707_030 0.0796594142 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
13 Hb_011689_080 0.07968508 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
14 Hb_007154_020 0.0811614273 - - -
15 Hb_012627_050 0.0857996369 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_003540_040 0.0862888925 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
17 Hb_017904_010 0.0873853181 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
18 Hb_010921_010 0.0887584345 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
19 Hb_002284_090 0.0899145664 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
20 Hb_003050_080 0.0900823038 - - 40S ribosomal protein S14, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_440 Hb_000392_440 Hb_011360_140 Hb_011360_140 Hb_000392_440--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_000392_440--Hb_005993_040 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_011571_020 Hb_011571_020 Hb_000392_440--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_011360_140--Hb_005993_040 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_005993_040--Hb_002928_130 Hb_005993_040--Hb_011571_020 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_002928_130--Hb_000015_080 Hb_002232_440 Hb_002232_440 Hb_002928_130--Hb_002232_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_011571_020--Hb_000473_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99576 2.00918 4.01689 1.23494 5.92021 6.72871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02566 7.79939 4.77407 2.681 2.04372

CAGE analysis