Hb_000392_460

Information

Type -
Description -
Location Contig392: 379196-380255
Sequence    

Annotation

kegg
ID rcu:RCOM_1513740
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002511525.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R950
description Pectate lyase OS=Ricinus communis GN=RCOM_1513740 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39306: 379545-379855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_460 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_021346_040 0.1014562644 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
3 Hb_083822_010 0.1034694441 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_000853_040 0.2095298107 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001623_310 0.2264226837 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
6 Hb_025669_030 0.2349541354 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
7 Hb_003938_030 0.2355915964 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
8 Hb_011505_010 0.2828835145 - - -
9 Hb_000375_230 0.2907870821 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_167452_010 0.2938413275 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
11 Hb_002435_020 0.303400006 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_105226_010 0.3035804804 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
13 Hb_000069_580 0.3049704392 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008221_020 0.3090347169 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
15 Hb_002259_180 0.3103935949 - - -
16 Hb_011972_010 0.310727208 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006355_120 0.3145250542 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001410_050 0.3158240677 - - putative polyprotein [Oryza sativa Japonica Group]
19 Hb_040359_010 0.3349530684 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_001269_460 0.3440581087 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_460 Hb_000392_460 Hb_021346_040 Hb_021346_040 Hb_000392_460--Hb_021346_040 Hb_083822_010 Hb_083822_010 Hb_000392_460--Hb_083822_010 Hb_000853_040 Hb_000853_040 Hb_000392_460--Hb_000853_040 Hb_001623_310 Hb_001623_310 Hb_000392_460--Hb_001623_310 Hb_025669_030 Hb_025669_030 Hb_000392_460--Hb_025669_030 Hb_003938_030 Hb_003938_030 Hb_000392_460--Hb_003938_030 Hb_021346_040--Hb_000853_040 Hb_021346_040--Hb_083822_010 Hb_167452_010 Hb_167452_010 Hb_021346_040--Hb_167452_010 Hb_021346_040--Hb_003938_030 Hb_021346_040--Hb_025669_030 Hb_083822_010--Hb_003938_030 Hb_000375_230 Hb_000375_230 Hb_083822_010--Hb_000375_230 Hb_083822_010--Hb_001623_310 Hb_083822_010--Hb_000853_040 Hb_000853_040--Hb_167452_010 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050 Hb_001623_310--Hb_025669_030 Hb_001623_310--Hb_021346_040 Hb_171062_010 Hb_171062_010 Hb_001623_310--Hb_171062_010 Hb_059481_010 Hb_059481_010 Hb_001623_310--Hb_059481_010 Hb_025669_030--Hb_083822_010 Hb_025669_030--Hb_171062_010 Hb_000696_020 Hb_000696_020 Hb_025669_030--Hb_000696_020 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_003938_030--Hb_000375_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128204 0.354579 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261273 0 0 0

CAGE analysis