Hb_000392_550

Information

Type -
Description -
Location Contig392: 405699-414156
Sequence    

Annotation

kegg
ID rcu:RCOM_0937260
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012069766.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9SAA2
description ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1
trembl
ID A0A067LN55
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_10075 PE=3 SV=1
Gene Ontology
ID GO:0004252
description atp-dependent clp protease proteolytic subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39311: 405709-414084 , PASA_asmbl_39313: 412726-413496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_550 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000510_030 0.0779699294 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
3 Hb_001369_790 0.0801832234 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
4 Hb_000032_370 0.0860971598 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
5 Hb_004317_030 0.0905120622 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
6 Hb_000035_480 0.0960217054 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
7 Hb_027298_010 0.0971054511 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007192_030 0.0973860393 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
9 Hb_001711_120 0.0974304048 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_140627_010 0.0980413621 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001301_340 0.0988905054 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
12 Hb_000457_290 0.1023461922 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_021079_010 0.1056927256 - - PREDICTED: histone H2B-like [Populus euphratica]
14 Hb_001898_050 0.1061903809 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
15 Hb_007904_230 0.1071367966 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
16 Hb_001892_070 0.1079004677 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
17 Hb_004440_060 0.1079684504 - - aldose 1-epimerase, putative [Ricinus communis]
18 Hb_000394_180 0.1094981198 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
19 Hb_002876_020 0.1116456341 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
20 Hb_000403_070 0.1121114563 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_550 Hb_000392_550 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_000510_030--Hb_004317_030 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_000510_030--Hb_000032_370 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_000032_370--Hb_004317_030 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_004317_030--Hb_002045_060 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000465_070 Hb_000465_070 Hb_000035_480--Hb_000465_070 Hb_140627_010 Hb_140627_010 Hb_000035_480--Hb_140627_010 Hb_000457_290 Hb_000457_290 Hb_000035_480--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_027298_010--Hb_000032_370 Hb_027298_010--Hb_065525_120 Hb_027298_010--Hb_140627_010 Hb_009780_050 Hb_009780_050 Hb_027298_010--Hb_009780_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.11875 10.0097 41.6393 34.7913 6.13746 10.6087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8738 55.979 23.1324 25.6778 50.7173

CAGE analysis