Hb_000393_020

Information

Type -
Description -
Location Contig393: 122117-143344
Sequence    

Annotation

kegg
ID rcu:RCOM_0865400
description lipid binding protein, putative
nr
ID XP_002519855.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID F4JSE7
description Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana GN=EDR2 PE=2 SV=1
trembl
ID B9S1J0
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0865400 PE=4 SV=1
Gene Ontology
ID GO:0008289
description protein enhanced disease resistance 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39395: 122241-143331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000393_020 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_004117_260 0.0604548518 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004078_040 0.0628495349 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
4 Hb_000349_260 0.0682924217 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
5 Hb_001300_150 0.0701788224 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
6 Hb_000928_070 0.0707283099 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
7 Hb_001314_070 0.0714796573 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000454_090 0.072748158 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
9 Hb_000359_060 0.0737823177 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
10 Hb_000890_150 0.0759060662 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
11 Hb_000925_130 0.0791498494 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
12 Hb_000049_210 0.0797428131 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
13 Hb_000926_090 0.0798393659 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
14 Hb_000173_410 0.080526471 - - PREDICTED: BI1-like protein [Jatropha curcas]
15 Hb_022250_060 0.0811449546 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
16 Hb_000483_260 0.0829723334 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
17 Hb_005054_110 0.0830246697 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
18 Hb_000288_030 0.0846376463 - - PREDICTED: syntaxin-32 [Jatropha curcas]
19 Hb_009339_030 0.0847595311 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
20 Hb_000465_160 0.0849327222 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]

Gene co-expression network

sample Hb_000393_020 Hb_000393_020 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070 Hb_003657_010 Hb_003657_010 Hb_004117_260--Hb_003657_010 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_004117_260--Hb_001314_070 Hb_000359_060 Hb_000359_060 Hb_004078_040--Hb_000359_060 Hb_000173_410 Hb_000173_410 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000454_090 Hb_000454_090 Hb_004078_040--Hb_000454_090 Hb_004078_040--Hb_000928_070 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_000603_080 Hb_000603_080 Hb_001314_070--Hb_000603_080 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1532 14.1495 16.4 18.594 10.893 10.8246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4834 18.6657 28.9215 15.8126 14.5127

CAGE analysis