Hb_000394_190

Information

Type transcription factor
Description TF Family: C2H2
Location Contig394: 164440-166955
Sequence    

Annotation

kegg
ID rcu:RCOM_1147820
description zinc finger protein, putative
nr
ID XP_002533583.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VHT8
description Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2
trembl
ID B9T5R4
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1147820 PE=4 SV=1
Gene Ontology
ID GO:0005730
description transcription factor iiia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39464: 164484-166518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000394_190 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_000261_250 0.0547159001 - - elongation factor 1-alpha [Lepidium sativum]
3 Hb_000244_300 0.0633907211 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
4 Hb_000787_170 0.0659780136 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
5 Hb_003467_010 0.0701125221 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
6 Hb_012799_110 0.0715814365 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
7 Hb_033095_020 0.0731516194 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000359_330 0.0738470551 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011848_010 0.0739243495 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_003849_060 0.0744571979 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
11 Hb_002192_080 0.076004709 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_011386_040 0.0767894389 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
13 Hb_004450_060 0.0799844046 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
14 Hb_106552_050 0.0810795782 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
15 Hb_000803_110 0.0812689383 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_000140_080 0.0820791273 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
17 Hb_011942_080 0.0821145245 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
18 Hb_000939_060 0.0860396039 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
19 Hb_009222_010 0.0864398531 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_000976_320 0.0866026893 - - UPF0061 protein azo1574 [Morus notabilis]

Gene co-expression network

sample Hb_000394_190 Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_000663_040 Hb_000663_040 Hb_000244_300--Hb_000663_040 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_000244_300--Hb_003849_060 Hb_000939_060 Hb_000939_060 Hb_000787_170--Hb_000939_060 Hb_000787_170--Hb_000261_250 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_012799_110--Hb_011942_080 Hb_012799_110--Hb_003849_060 Hb_012799_110--Hb_011848_010 Hb_012799_110--Hb_033095_020 Hb_012799_110--Hb_003467_010 Hb_033095_020--Hb_000140_080 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.098 38.2064 30.1199 14.4565 44.3013 56.9534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.092 39.7933 18.0644 17.0431 10.8458

CAGE analysis