Hb_000395_010

Information

Type -
Description -
Location Contig395: 36869-40558
Sequence    

Annotation

kegg
ID rcu:RCOM_1313230
description alpha/beta hydrolase domain containing protein 1,3, putative
nr
ID XP_002518909.1
description alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
swissprot
ID Q40863
description Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1
trembl
ID B9RYU0
description Alpha/beta hydrolase domain containing protein 1,3, putative OS=Ricinus communis GN=RCOM_1313230 PE=4 SV=1
Gene Ontology
ID GO:0016787
description embryogenesis-associated protein emb8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39494: 36911-40062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_010 0.0 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
2 Hb_000210_080 0.0984967608 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
3 Hb_000684_200 0.1069789493 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_004837_100 0.1070311411 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
5 Hb_004162_270 0.1089574375 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000805_010 0.1201325529 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
7 Hb_158092_100 0.1231943323 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
8 Hb_015141_010 0.1233275673 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
9 Hb_000175_050 0.125333459 - - -
10 Hb_003053_070 0.1258555182 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
11 Hb_000054_030 0.1269949775 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
12 Hb_000991_020 0.1312167933 - - amino acid transporter, putative [Ricinus communis]
13 Hb_003935_070 0.1330906219 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_000019_080 0.1331582408 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
15 Hb_011053_030 0.1337152292 - - -
16 Hb_000032_140 0.1347390494 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006420_010 0.1349646018 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
18 Hb_000834_080 0.1352507841 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
19 Hb_126917_010 0.1389838913 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
20 Hb_000264_280 0.1398396621 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000395_010 Hb_000395_010 Hb_000210_080 Hb_000210_080 Hb_000395_010--Hb_000210_080 Hb_000684_200 Hb_000684_200 Hb_000395_010--Hb_000684_200 Hb_004837_100 Hb_004837_100 Hb_000395_010--Hb_004837_100 Hb_004162_270 Hb_004162_270 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_000210_080--Hb_158092_100 Hb_002529_090 Hb_002529_090 Hb_000210_080--Hb_002529_090 Hb_000388_060 Hb_000388_060 Hb_000210_080--Hb_000388_060 Hb_003680_090 Hb_003680_090 Hb_000210_080--Hb_003680_090 Hb_004348_040 Hb_004348_040 Hb_000210_080--Hb_004348_040 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_000684_200--Hb_004837_100 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_000019_080 Hb_000019_080 Hb_004837_100--Hb_000019_080 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004837_100--Hb_004162_270 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_004162_270--Hb_003680_090 Hb_004162_270--Hb_003053_070 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.787448 1.72838 12.2589 8.95415 0.31225 0.584643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07046 3.07443 1.97171 4.10004 23.0788

CAGE analysis