Hb_000395_020

Information

Type -
Description -
Location Contig395: 45688-55904
Sequence    

Annotation

kegg
ID rcu:RCOM_1313180
description hypothetical protein
nr
ID XP_012086604.1
description PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20356 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tetratricopeptide repeat-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39495: 47010-55955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_020 0.0 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
2 Hb_000868_060 0.0581844346 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
3 Hb_000523_050 0.0603148826 - - microsomal glutathione s-transferase, putative [Ricinus communis]
4 Hb_001040_040 0.0702845545 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
5 Hb_003813_040 0.0762115507 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
6 Hb_001050_010 0.0789647085 - - Advillin [Gossypium arboreum]
7 Hb_002078_020 0.0793726681 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_000480_010 0.0796338785 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002888_070 0.0815835797 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
10 Hb_000189_330 0.0817100686 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
11 Hb_001102_080 0.0830130282 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
12 Hb_000002_490 0.0836453652 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
13 Hb_018790_070 0.0882860957 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
14 Hb_004837_190 0.0885214995 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
15 Hb_006620_020 0.0891040205 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_000270_630 0.089203182 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
17 Hb_009252_100 0.0907777003 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
18 Hb_000009_480 0.091085365 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
19 Hb_007592_030 0.0921373099 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_011174_090 0.092234063 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_020 Hb_000395_020 Hb_000868_060 Hb_000868_060 Hb_000395_020--Hb_000868_060 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_001040_040 Hb_001040_040 Hb_000395_020--Hb_001040_040 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_000868_060--Hb_001040_040 Hb_000523_050--Hb_002078_020 Hb_003813_130 Hb_003813_130 Hb_000523_050--Hb_003813_130 Hb_011930_160 Hb_011930_160 Hb_000523_050--Hb_011930_160 Hb_000538_100 Hb_000538_100 Hb_000523_050--Hb_000538_100 Hb_000270_630 Hb_000270_630 Hb_000523_050--Hb_000270_630 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_000189_330 Hb_000189_330 Hb_003813_040--Hb_000189_330 Hb_001377_320 Hb_001377_320 Hb_003813_040--Hb_001377_320 Hb_007592_030 Hb_007592_030 Hb_003813_040--Hb_007592_030 Hb_002686_250 Hb_002686_250 Hb_003813_040--Hb_002686_250 Hb_003813_040--Hb_002078_020 Hb_000777_050 Hb_000777_050 Hb_003813_040--Hb_000777_050 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_002078_020--Hb_001926_030 Hb_004055_150 Hb_004055_150 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5369 18.5305 30.5618 21.8797 48.8776 33.7929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.78 15.0976 20.6048 23.495 10.654

CAGE analysis