Hb_000395_060

Information

Type -
Description -
Location Contig395: 102080-103894
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_060 0.0 - - -
2 Hb_005408_040 0.186540752 - - -
3 Hb_000107_640 0.1932861805 - - conserved hypothetical protein [Ricinus communis]
4 Hb_175572_010 0.204754899 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_001959_300 0.2185371166 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
6 Hb_009954_050 0.2274794285 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
7 Hb_005009_020 0.2306312282 - - -
8 Hb_008699_040 0.2327003761 - - -
9 Hb_000979_050 0.2376884409 - - -
10 Hb_148262_020 0.2487127707 - - -
11 Hb_000270_150 0.2511640151 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_002636_020 0.2521199138 - - -
13 Hb_001520_020 0.2539266472 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
14 Hb_000011_340 0.2542345942 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
15 Hb_001379_130 0.2573832727 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
16 Hb_000003_770 0.2576774498 - - -
17 Hb_039305_010 0.2637339051 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
18 Hb_000847_140 0.2695016538 - - -
19 Hb_000736_010 0.2701446784 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
20 Hb_004680_020 0.2734783834 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]

Gene co-expression network

sample Hb_000395_060 Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000395_060--Hb_005408_040 Hb_000107_640 Hb_000107_640 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_005009_020 Hb_005009_020 Hb_000395_060--Hb_005009_020 Hb_012324_020 Hb_012324_020 Hb_005408_040--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_005408_040--Hb_094721_010 Hb_005408_040--Hb_000107_640 Hb_000003_770 Hb_000003_770 Hb_005408_040--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_005408_040--Hb_001379_130 Hb_000107_640--Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_000107_640--Hb_003116_020 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_000107_640--Hb_005009_020 Hb_175572_010--Hb_003116_020 Hb_007761_050 Hb_007761_050 Hb_175572_010--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_175572_010--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_175572_010--Hb_088496_010 Hb_003963_020 Hb_003963_020 Hb_001959_300--Hb_003963_020 Hb_012807_010 Hb_012807_010 Hb_001959_300--Hb_012807_010 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_004691_040 Hb_004691_040 Hb_001959_300--Hb_004691_040 Hb_155092_010 Hb_155092_010 Hb_009954_050--Hb_155092_010 Hb_001140_240 Hb_001140_240 Hb_009954_050--Hb_001140_240 Hb_001348_110 Hb_001348_110 Hb_009954_050--Hb_001348_110 Hb_001520_020 Hb_001520_020 Hb_009954_050--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_009954_050--Hb_000011_340 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_075653_020 Hb_075653_020 Hb_005009_020--Hb_075653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.064487 0 0 0 0.0842208 0.651379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89264 2.27453 0 0.690017 0

CAGE analysis